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RRNAD1 (ribosomal RNA adenine dimethylase domain containing 1)

Identity

Alias_namesC1orf66
chromosome 1 open reading frame 66
Alias_symbol (synonym)CGI-41
METTL25B
Other alias
HGNC (Hugo) RRNAD1
LocusID (NCBI) 51093
Atlas_Id 72891
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 156728471 and ends at 156736960 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MLLT6 (17q12) / RRNAD1 (1q23.1)NUSAP1 (15q15.1) / RRNAD1 (1q23.1)RRNAD1 (1q23.1) / ARNT (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RRNAD1   24273
Cards
Entrez_Gene (NCBI)RRNAD1  51093  ribosomal RNA adenine dimethylase domain containing 1
AliasesC1orf66; CGI-41; METTL25B
GeneCards (Weizmann)RRNAD1
Ensembl hg19 (Hinxton)ENSG00000143303 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143303 [Gene_View]  chr1:156728471-156736960 [Contig_View]  RRNAD1 [Vega]
ICGC DataPortalENSG00000143303
TCGA cBioPortalRRNAD1
AceView (NCBI)RRNAD1
Genatlas (Paris)RRNAD1
WikiGenes51093
SOURCE (Princeton)RRNAD1
Genetics Home Reference (NIH)RRNAD1
Genomic and cartography
GoldenPath hg38 (UCSC)RRNAD1  -     chr1:156728471-156736960 +  1q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RRNAD1  -     1q23.1   [Description]    (hg19-Feb_2009)
EnsemblRRNAD1 - 1q23.1 [CytoView hg19]  RRNAD1 - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBIRRNAD1 [Mapview hg19]  RRNAD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151800 AK000412 BC011382 BX094595
RefSeq transcript (Entrez)NM_001142560 NM_015997
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RRNAD1
Cluster EST : UnigeneHs.512597 [ NCBI ]
CGAP (NCI)Hs.512597
Alternative Splicing GalleryENSG00000143303
Gene ExpressionRRNAD1 [ NCBI-GEO ]   RRNAD1 [ EBI - ARRAY_EXPRESS ]   RRNAD1 [ SEEK ]   RRNAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)RRNAD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51093
GTEX Portal (Tissue expression)RRNAD1
Human Protein AtlasENSG00000143303-RRNAD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FB5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FB5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FB5
Splice isoforms : SwissVarQ96FB5
PhosPhoSitePlusQ96FB5
Domains : Interpro (EBI)Methyltranfer_dom    rRNA_Ade_Mease_Trfase_CS    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Methyltransf_32 (PF13679)   
Domain families : Pfam (NCBI)pfam13679   
Conserved Domain (NCBI)RRNAD1
DMDM Disease mutations51093
Blocks (Seattle)RRNAD1
SuperfamilyQ96FB5
Human Protein Atlas [tissue]ENSG00000143303-RRNAD1 [tissue]
Peptide AtlasQ96FB5
HPRD10824
IPIIPI00101357   IPI00607713   IPI00979328   IPI00974479   IPI00974357   IPI00973853   IPI00976457   
Protein Interaction databases
DIP (DOE-UCLA)Q96FB5
IntAct (EBI)Q96FB5
FunCoupENSG00000143303
BioGRIDRRNAD1
STRING (EMBL)RRNAD1
ZODIACRRNAD1
Ontologies - Pathways
QuickGOQ96FB5
Ontology : AmiGOrRNA (adenine-N6,N6-)-dimethyltransferase activity  integral component of membrane  rRNA methylation  
Ontology : EGO-EBIrRNA (adenine-N6,N6-)-dimethyltransferase activity  integral component of membrane  rRNA methylation  
NDEx NetworkRRNAD1
Atlas of Cancer Signalling NetworkRRNAD1
Wikipedia pathwaysRRNAD1
Orthology - Evolution
OrthoDB51093
GeneTree (enSembl)ENSG00000143303
Phylogenetic Trees/Animal Genes : TreeFamRRNAD1
HOVERGENQ96FB5
HOGENOMQ96FB5
Homologs : HomoloGeneRRNAD1
Homology/Alignments : Family Browser (UCSC)RRNAD1
Gene fusions - Rearrangements
Fusion: Tumor Portal RRNAD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRNAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRNAD1
dbVarRRNAD1
ClinVarRRNAD1
1000_GenomesRRNAD1 
Exome Variant ServerRRNAD1
ExAC (Exome Aggregation Consortium)ENSG00000143303
GNOMAD BrowserENSG00000143303
Genetic variants : HAPMAP51093
Genomic Variants (DGV)RRNAD1 [DGVbeta]
DECIPHERRRNAD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRRNAD1 
Mutations
ICGC Data PortalRRNAD1 
TCGA Data PortalRRNAD1 
Broad Tumor PortalRRNAD1
OASIS PortalRRNAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRRNAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRRNAD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRNAD1
DgiDB (Drug Gene Interaction Database)RRNAD1
DoCM (Curated mutations)RRNAD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRNAD1 (select a term)
intoGenRRNAD1
Cancer3DRRNAD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRRNAD1
Genetic Testing Registry RRNAD1
NextProtQ96FB5 [Medical]
TSGene51093
GENETestsRRNAD1
Target ValidationRRNAD1
Huge Navigator RRNAD1 [HugePedia]
snp3D : Map Gene to Disease51093
BioCentury BCIQRRNAD1
ClinGenRRNAD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51093
Chemical/Pharm GKB GenePA142672516
Clinical trialRRNAD1
Miscellaneous
canSAR (ICR)RRNAD1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRNAD1
EVEXRRNAD1
GoPubMedRRNAD1
iHOPRRNAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:26:00 CET 2017

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