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RRP1 (ribosomal RNA processing 1)

Identity

Alias (NCBI)D21S2056E
NNP-1
NOP52
RRP1A
HGNC (Hugo) RRP1
HGNC Alias symbNNP-1
Nop52
NOP52
RRP1A
D21S2056E
HGNC Alias nameDNA segment on chromosome 21 (unique) 2056 expressed sequence
 Nnp1 homolog, nucleolar protein (Drosophila)
HGNC Previous nameribosomal RNA processing 1 homolog (S. cerevisiae)
LocusID (NCBI) 8568
Atlas_Id 56486
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 43789577 and ends at 43805278 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RRP1 (21q22.3) / GAN (16q23.2)RRP1 (21q22.3) / RRP1 (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RRP1   18785
Cards
Entrez_Gene (NCBI)RRP1    ribosomal RNA processing 1
AliasesD21S2056E; NNP-1; NOP52; RRP1A
GeneCards (Weizmann)RRP1
Ensembl hg19 (Hinxton)ENSG00000160214 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160214 [Gene_View]  ENSG00000160214 [Sequence]  chr21:43789577-43805278 [Contig_View]  RRP1 [Vega]
ICGC DataPortalENSG00000160214
TCGA cBioPortalRRP1
AceView (NCBI)RRP1
Genatlas (Paris)RRP1
SOURCE (Princeton)RRP1
Genetics Home Reference (NIH)RRP1
Genomic and cartography
GoldenPath hg38 (UCSC)RRP1  -     chr21:43789577-43805278 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RRP1  -     21q22.3   [Description]    (hg19-Feb_2009)
GoldenPathRRP1 - 21q22.3 [CytoView hg19]  RRP1 - 21q22.3 [CytoView hg38]
ImmunoBaseENSG00000160214
genome Data Viewer NCBIRRP1 [Mapview hg19]  
OMIM610653   
Gene and transcription
Genbank (Entrez)AI634547 AK026354 AK223185 AK223215 AK303000
RefSeq transcript (Entrez)NM_003683
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RRP1
Alternative Splicing GalleryENSG00000160214
Gene ExpressionRRP1 [ NCBI-GEO ]   RRP1 [ EBI - ARRAY_EXPRESS ]   RRP1 [ SEEK ]   RRP1 [ MEM ]
Gene Expression Viewer (FireBrowse)RRP1 [ Firebrowse - Broad ]
GenevisibleExpression of RRP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8568
GTEX Portal (Tissue expression)RRP1
Human Protein AtlasENSG00000160214-RRP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56182   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56182  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56182
Splice isoforms : SwissVarP56182
PhosPhoSitePlusP56182
Domains : Interpro (EBI)Nop52   
Domain families : Pfam (Sanger)Nop52 (PF05997)   
Domain families : Pfam (NCBI)pfam05997   
Conserved Domain (NCBI)RRP1
Blocks (Seattle)RRP1
SuperfamilyP56182
Human Protein Atlas [tissue]ENSG00000160214-RRP1 [tissue]
Peptide AtlasP56182
HPRD10857
IPIIPI00550766   IPI00909754   IPI01010748   
Protein Interaction databases
DIP (DOE-UCLA)P56182
IntAct (EBI)P56182
BioGRIDRRP1
STRING (EMBL)RRP1
ZODIACRRP1
Ontologies - Pathways
QuickGOP56182
Ontology : AmiGORNA binding  protein binding  nucleus  nucleolus  nucleolus  rRNA processing  preribosome, large subunit precursor  preribosome, small subunit precursor  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleolus  nucleolus  rRNA processing  preribosome, large subunit precursor  preribosome, small subunit precursor  
NDEx NetworkRRP1
Atlas of Cancer Signalling NetworkRRP1
Wikipedia pathwaysRRP1
Orthology - Evolution
OrthoDB8568
GeneTree (enSembl)ENSG00000160214
Phylogenetic Trees/Animal Genes : TreeFamRRP1
HOGENOMP56182
Homologs : HomoloGeneRRP1
Homology/Alignments : Family Browser (UCSC)RRP1
Gene fusions - Rearrangements
Fusion : QuiverRRP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRP1 [hg38]
dbVarRRP1
ClinVarRRP1
MonarchRRP1
1000_GenomesRRP1 
Exome Variant ServerRRP1
GNOMAD BrowserENSG00000160214
Varsome BrowserRRP1
Genomic Variants (DGV)RRP1 [DGVbeta]
DECIPHERRRP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRRP1 
Mutations
ICGC Data PortalRRP1 
TCGA Data PortalRRP1 
Broad Tumor PortalRRP1
OASIS PortalRRP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRRP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRRP1
Mutations and Diseases : HGMDRRP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRP1
DgiDB (Drug Gene Interaction Database)RRP1
DoCM (Curated mutations)RRP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRP1 (select a term)
intoGenRRP1
Cancer3DRRP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610653   
Orphanet
DisGeNETRRP1
MedgenRRP1
Genetic Testing Registry RRP1
NextProtP56182 [Medical]
GENETestsRRP1
Target ValidationRRP1
Huge Navigator RRP1 [HugePedia]
ClinGenRRP1
Clinical trials, drugs, therapy
MyCancerGenomeRRP1
Protein Interactions : CTD
Pharm GKB GenePA162402091
PharosP56182
Clinical trialRRP1
Miscellaneous
canSAR (ICR)RRP1 (select the gene name)
HarmonizomeRRP1
DataMed IndexRRP1
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRRP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri Jan 1 18:35:51 CET 2021
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