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RRP1 (ribosomal RNA processing 1)

Identity

Alias_namesribosomal RNA processing 1 homolog (S. cerevisiae)
Alias_symbol (synonym)NNP-1
Nop52
NOP52
RRP1A
D21S2056E
Other alias
HGNC (Hugo) RRP1
LocusID (NCBI) 8568
Atlas_Id 56486
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 45209418 and ends at 45223983 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RRP1 (21q22.3) / GAN (16q23.2)RRP1 (21q22.3) / RRP1 (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RRP1   18785
Cards
Entrez_Gene (NCBI)RRP1  8568  ribosomal RNA processing 1
AliasesD21S2056E; NNP-1; NOP52; RRP1A
GeneCards (Weizmann)RRP1
Ensembl hg19 (Hinxton)ENSG00000160214 [Gene_View]  chr21:45209418-45223983 [Contig_View]  RRP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160214 [Gene_View]  chr21:45209418-45223983 [Contig_View]  RRP1 [Vega]
ICGC DataPortalENSG00000160214
TCGA cBioPortalRRP1
AceView (NCBI)RRP1
Genatlas (Paris)RRP1
WikiGenes8568
SOURCE (Princeton)RRP1
Genetics Home Reference (NIH)RRP1
Genomic and cartography
GoldenPath hg19 (UCSC)RRP1  -     chr21:45209418-45223983 +  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RRP1  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblRRP1 - 21q22.3 [CytoView hg19]  RRP1 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIRRP1 [Mapview hg19]  RRP1 [Mapview hg38]
OMIM610653   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_003683
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RRP1
Cluster EST : UnigeneHs.110757 [ NCBI ]
CGAP (NCI)Hs.110757
Alternative Splicing GalleryENSG00000160214
Gene ExpressionRRP1 [ NCBI-GEO ]   RRP1 [ EBI - ARRAY_EXPRESS ]   RRP1 [ SEEK ]   RRP1 [ MEM ]
Gene Expression Viewer (FireBrowse)RRP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8568
GTEX Portal (Tissue expression)RRP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56182   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56182  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56182
Splice isoforms : SwissVarP56182
PhosPhoSitePlusP56182
Domains : Interpro (EBI)Nop52   
Domain families : Pfam (Sanger)Nop52 (PF05997)   
Domain families : Pfam (NCBI)pfam05997   
Conserved Domain (NCBI)RRP1
DMDM Disease mutations8568
Blocks (Seattle)RRP1
SuperfamilyP56182
Human Protein AtlasENSG00000160214
Peptide AtlasP56182
HPRD10857
IPIIPI00550766   IPI00909754   IPI01010748   
Protein Interaction databases
DIP (DOE-UCLA)P56182
IntAct (EBI)P56182
FunCoupENSG00000160214
BioGRIDRRP1
STRING (EMBL)RRP1
ZODIACRRP1
Ontologies - Pathways
QuickGOP56182
Ontology : AmiGOnucleus  nucleolus  rRNA processing  preribosome, large subunit precursor  preribosome, small subunit precursor  poly(A) RNA binding  
Ontology : EGO-EBInucleus  nucleolus  rRNA processing  preribosome, large subunit precursor  preribosome, small subunit precursor  poly(A) RNA binding  
NDEx NetworkRRP1
Atlas of Cancer Signalling NetworkRRP1
Wikipedia pathwaysRRP1
Orthology - Evolution
OrthoDB8568
GeneTree (enSembl)ENSG00000160214
Phylogenetic Trees/Animal Genes : TreeFamRRP1
HOVERGENP56182
HOGENOMP56182
Homologs : HomoloGeneRRP1
Homology/Alignments : Family Browser (UCSC)RRP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRP1
dbVarRRP1
ClinVarRRP1
1000_GenomesRRP1 
Exome Variant ServerRRP1
ExAC (Exome Aggregation Consortium)RRP1 (select the gene name)
Genetic variants : HAPMAP8568
Genomic Variants (DGV)RRP1 [DGVbeta]
DECIPHER (Syndromes)21:45209418-45223983  ENSG00000160214
CONAN: Copy Number AnalysisRRP1 
Mutations
ICGC Data PortalRRP1 
TCGA Data PortalRRP1 
Broad Tumor PortalRRP1
OASIS PortalRRP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRRP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRRP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRP1
DgiDB (Drug Gene Interaction Database)RRP1
DoCM (Curated mutations)RRP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRP1 (select a term)
intoGenRRP1
Cancer3DRRP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610653   
Orphanet
MedgenRRP1
Genetic Testing Registry RRP1
NextProtP56182 [Medical]
TSGene8568
GENETestsRRP1
Huge Navigator RRP1 [HugePedia]
snp3D : Map Gene to Disease8568
BioCentury BCIQRRP1
ClinGenRRP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8568
Chemical/Pharm GKB GenePA162402091
Clinical trialRRP1
Miscellaneous
canSAR (ICR)RRP1 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRP1
EVEXRRP1
GoPubMedRRP1
iHOPRRP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:25:50 CET 2017

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