Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RRP12 (ribosomal RNA processing 12 homolog)

Identity

Alias (NCBI)KIAA0690
HGNC (Hugo) RRP12
HGNC Previous nameKIAA0690
HGNC Previous nameKIAA0690
 ribosomal RNA processing 12 homolog (S. cerevisiae)
LocusID (NCBI) 23223
Atlas_Id 56846
Location 10q24.1  [Link to chromosome band 10q24]
Location_base_pair Starts at 97356701 and ends at 97401340 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARHGAP19 (10q24.1) / RRP12 (10q24.1)EFCAB10 (7q22.3) / RRP12 (10q24.1)RRP12 (10q24.1) / ARRB1 (11q13.4)
RRP12 (10q24.1) / CRTAC1 (10q24.2)RRP12 (10q24.1) / EXOSC1 (10q24.1)RRP12 (10q24.1) / LOC100507412 (-)
RRP12 (10q24.1) / PIGR (1q32.1)RRP12 (10q24.1) / PTMA (2q37.1)RRP12 (10q24.1) / RRP12 (10q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RRP12   29100
Cards
Entrez_Gene (NCBI)RRP12    ribosomal RNA processing 12 homolog
AliasesKIAA0690
GeneCards (Weizmann)RRP12
Ensembl hg19 (Hinxton)ENSG00000052749 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000052749 [Gene_View]  ENSG00000052749 [Sequence]  chr10:97356701-97401340 [Contig_View]  RRP12 [Vega]
ICGC DataPortalENSG00000052749
TCGA cBioPortalRRP12
AceView (NCBI)RRP12
Genatlas (Paris)RRP12
SOURCE (Princeton)RRP12
Genetics Home Reference (NIH)RRP12
Genomic and cartography
GoldenPath hg38 (UCSC)RRP12  -     chr10:97356701-97401340 -  10q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RRP12  -     10q24.1   [Description]    (hg19-Feb_2009)
GoldenPathRRP12 - 10q24.1 [CytoView hg19]  RRP12 - 10q24.1 [CytoView hg38]
ImmunoBaseENSG00000052749
Genome Data Viewer NCBIRRP12 [Mapview hg19]  
OMIM617723   
Gene and transcription
Genbank (Entrez)AB014590 AK000238 AK021460 AK022496 AK056614
RefSeq transcript (Entrez)NM_001145114 NM_001284337 NM_015179
Consensus coding sequences : CCDS (NCBI)RRP12
Gene ExpressionRRP12 [ NCBI-GEO ]   RRP12 [ EBI - ARRAY_EXPRESS ]   RRP12 [ SEEK ]   RRP12 [ MEM ]
Gene Expression Viewer (FireBrowse)RRP12 [ Firebrowse - Broad ]
GenevisibleExpression of RRP12 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23223
GTEX Portal (Tissue expression)RRP12
Human Protein AtlasENSG00000052749-RRP12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JTH9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JTH9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JTH9
PhosPhoSitePlusQ5JTH9
Domains : Interpro (EBI)ARM-type_fold    Uncharacterised_NUC173   
Domain families : Pfam (Sanger)NUC173 (PF08161)   
Domain families : Pfam (NCBI)pfam08161   
Conserved Domain (NCBI)RRP12
SuperfamilyQ5JTH9
AlphaFold pdb e-kbQ5JTH9   
Human Protein Atlas [tissue]ENSG00000052749-RRP12 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q5JTH9
IntAct (EBI)Q5JTH9
BioGRIDRRP12
STRING (EMBL)RRP12
ZODIACRRP12
Ontologies - Pathways
QuickGOQ5JTH9
Ontology : AmiGORNA binding  nucleolus  nucleolus  cytosol  plasma membrane  rRNA processing  integral component of membrane  nuclear membrane  intracellular membrane-bounded organelle  
Ontology : EGO-EBIRNA binding  nucleolus  nucleolus  cytosol  plasma membrane  rRNA processing  integral component of membrane  nuclear membrane  intracellular membrane-bounded organelle  
NDEx NetworkRRP12
Atlas of Cancer Signalling NetworkRRP12
Wikipedia pathwaysRRP12
Orthology - Evolution
OrthoDB23223
GeneTree (enSembl)ENSG00000052749
Phylogenetic Trees/Animal Genes : TreeFamRRP12
Homologs : HomoloGeneRRP12
Homology/Alignments : Family Browser (UCSC)RRP12
Gene fusions - Rearrangements
Fusion : QuiverRRP12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRP12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRP12
dbVarRRP12
ClinVarRRP12
MonarchRRP12
1000_GenomesRRP12 
Exome Variant ServerRRP12
GNOMAD BrowserENSG00000052749
Varsome BrowserRRP12
ACMGRRP12 variants
VarityQ5JTH9
Genomic Variants (DGV)RRP12 [DGVbeta]
DECIPHERRRP12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRRP12 
Mutations
ICGC Data PortalRRP12 
TCGA Data PortalRRP12 
Broad Tumor PortalRRP12
OASIS PortalRRP12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRRP12  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRRP12
Mutations and Diseases : HGMDRRP12
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRRP12
DgiDB (Drug Gene Interaction Database)RRP12
DoCM (Curated mutations)RRP12
CIViC (Clinical Interpretations of Variants in Cancer)RRP12
Cancer3DRRP12
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617723   
Orphanet
DisGeNETRRP12
MedgenRRP12
Genetic Testing Registry RRP12
NextProtQ5JTH9 [Medical]
GENETestsRRP12
Target ValidationRRP12
Huge Navigator RRP12 [HugePedia]
ClinGenRRP12
Clinical trials, drugs, therapy
MyCancerGenomeRRP12
Protein Interactions : CTDRRP12
Pharm GKB GenePA162402122
PharosQ5JTH9
Clinical trialRRP12
Miscellaneous
canSAR (ICR)RRP12
HarmonizomeRRP12
DataMed IndexRRP12
Probes
Litterature
PubMed89 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRRP12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:29:44 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.