Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RRP1B (ribosomal RNA processing 1B)

Identity

Alias_namesregulatory subunit 136
KIAA0179
Alias_symbol (synonym)Nnp1
RRP1
PPP1R136
Other aliasNNP1L
HGNC (Hugo) RRP1B
LocusID (NCBI) 23076
Atlas_Id 50041
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 45079432 and ends at 45115960 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RRP1B (21q22.3) / CAMTA1 (1p36.31)RRP1B (21q22.3) / TRAPPC10 (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RRP1B   23818
Cards
Entrez_Gene (NCBI)RRP1B  23076  ribosomal RNA processing 1B
AliasesKIAA0179; NNP1L; Nnp1; PPP1R136; 
RRP1
GeneCards (Weizmann)RRP1B
Ensembl hg19 (Hinxton)ENSG00000160208 [Gene_View]  chr21:45079432-45115960 [Contig_View]  RRP1B [Vega]
Ensembl hg38 (Hinxton)ENSG00000160208 [Gene_View]  chr21:45079432-45115960 [Contig_View]  RRP1B [Vega]
ICGC DataPortalENSG00000160208
TCGA cBioPortalRRP1B
AceView (NCBI)RRP1B
Genatlas (Paris)RRP1B
WikiGenes23076
SOURCE (Princeton)RRP1B
Genetics Home Reference (NIH)RRP1B
Genomic and cartography
GoldenPath hg19 (UCSC)RRP1B  -     chr21:45079432-45115960 +  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RRP1B  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblRRP1B - 21q22.3 [CytoView hg19]  RRP1B - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIRRP1B [Mapview hg19]  RRP1B [Mapview hg38]
OMIM610654   
Gene and transcription
Genbank (Entrez)AK056263 AK124620 BC014005 BC028386 BE544027
RefSeq transcript (Entrez)NM_015056
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929427
Consensus coding sequences : CCDS (NCBI)RRP1B
Cluster EST : UnigeneHs.565725 [ NCBI ]
CGAP (NCI)Hs.565725
Alternative Splicing GalleryENSG00000160208
Gene ExpressionRRP1B [ NCBI-GEO ]   RRP1B [ EBI - ARRAY_EXPRESS ]   RRP1B [ SEEK ]   RRP1B [ MEM ]
Gene Expression Viewer (FireBrowse)RRP1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23076
GTEX Portal (Tissue expression)RRP1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14684   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14684  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14684
Splice isoforms : SwissVarQ14684
PhosPhoSitePlusQ14684
Domains : Interpro (EBI)Nop52   
Domain families : Pfam (Sanger)Nop52 (PF05997)   
Domain families : Pfam (NCBI)pfam05997   
Conserved Domain (NCBI)RRP1B
DMDM Disease mutations23076
Blocks (Seattle)RRP1B
SuperfamilyQ14684
Human Protein AtlasENSG00000160208
Peptide AtlasQ14684
HPRD10009
IPIIPI00290952   IPI00032374   
Protein Interaction databases
DIP (DOE-UCLA)Q14684
IntAct (EBI)Q14684
FunCoupENSG00000160208
BioGRIDRRP1B
STRING (EMBL)RRP1B
ZODIACRRP1B
Ontologies - Pathways
QuickGOQ14684
Ontology : AmiGOeuchromatin  heterochromatin  nucleus  nucleolus  cytosol  rRNA processing  negative regulation of phosphatase activity  preribosome, large subunit precursor  preribosome, small subunit precursor  poly(A) RNA binding  
Ontology : EGO-EBIeuchromatin  heterochromatin  nucleus  nucleolus  cytosol  rRNA processing  negative regulation of phosphatase activity  preribosome, large subunit precursor  preribosome, small subunit precursor  poly(A) RNA binding  
NDEx NetworkRRP1B
Atlas of Cancer Signalling NetworkRRP1B
Wikipedia pathwaysRRP1B
Orthology - Evolution
OrthoDB23076
GeneTree (enSembl)ENSG00000160208
Phylogenetic Trees/Animal Genes : TreeFamRRP1B
HOVERGENQ14684
HOGENOMQ14684
Homologs : HomoloGeneRRP1B
Homology/Alignments : Family Browser (UCSC)RRP1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRP1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRP1B
dbVarRRP1B
ClinVarRRP1B
1000_GenomesRRP1B 
Exome Variant ServerRRP1B
ExAC (Exome Aggregation Consortium)RRP1B (select the gene name)
Genetic variants : HAPMAP23076
Genomic Variants (DGV)RRP1B [DGVbeta]
DECIPHER (Syndromes)21:45079432-45115960  ENSG00000160208
CONAN: Copy Number AnalysisRRP1B 
Mutations
ICGC Data PortalRRP1B 
TCGA Data PortalRRP1B 
Broad Tumor PortalRRP1B
OASIS PortalRRP1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRRP1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRRP1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRP1B
DgiDB (Drug Gene Interaction Database)RRP1B
DoCM (Curated mutations)RRP1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRP1B (select a term)
intoGenRRP1B
Cancer3DRRP1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610654   
Orphanet
MedgenRRP1B
Genetic Testing Registry RRP1B
NextProtQ14684 [Medical]
TSGene23076
GENETestsRRP1B
Huge Navigator RRP1B [HugePedia]
snp3D : Map Gene to Disease23076
BioCentury BCIQRRP1B
ClinGenRRP1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23076
Chemical/Pharm GKB GenePA162402138
Clinical trialRRP1B
Miscellaneous
canSAR (ICR)RRP1B (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRP1B
EVEXRRP1B
GoPubMedRRP1B
iHOPRRP1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:18:05 CEST 2017

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