Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RRP1B (ribosomal RNA processing 1 homolog B (S. cerevisiae))

Identity

Other namesKIAA0179
NNP1L
Nnp1
RRP1
HGNC (Hugo) RRP1B
LocusID (NCBI) 23076
Location 21q22.3
Location_base_pair Starts at 45079432 and ends at 45115960 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RRP1B   23818
Entrez_Gene (NCBI)RRP1B  23076  ribosomal RNA processing 1 homolog B (S. cerevisiae)
Cards
GeneCards (Weizmann)RRP1B
Ensembl (Hinxton)ENSG00000160208 [Gene_View]  chr21:45079432-45115960 [Contig_View]  RRP1B [Vega]
AceView (NCBI)RRP1B
Genatlas (Paris)RRP1B
SOURCE (Stanford)NM_015056
Genomic and cartography
GoldenPath (UCSC)RRP1B  -  21q22.3   chr21:45079432-45115960 +  21q22.3   [Description]    (hg19-Feb_2009)
EnsemblRRP1B - 21q22.3 [CytoView]
Mapping of homologs : NCBIRRP1B [Mapview]
OMIM610654   
Gene and transcription
Genbank (Entrez)AK056263 AK124620 BC014005 BC028386 BE544027
RefSeq transcript (SRS)NM_015056
RefSeq transcript (Entrez)NM_015056
RefSeq genomic (SRS)AC_000153 NC_000021 NC_018932 NT_011515 NW_001838716 NW_004078109
RefSeq genomic (Entrez)AC_000153 NC_000021 NC_018932 NT_011515 NW_001838716 NW_004078109
Consensus coding sequences : CCDS (NCBI)RRP1B
Cluster EST : UnigeneHs.565725 [ SRS ] Hs.565725 [ NCBI ]
CGAP (NCI)Hs.565725
Alternative Splicing : Fast-db (Paris)GSHG0019523
Alternative Splicing GalleryENSG00000160208
Gene ExpressionRRP1B [ NCBI-GEO ]   RRP1B [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14684 (SRS) Q14684 (Uniprot)
NextProtQ14684
With graphics : InterProQ14684
Splice isoforms : SwissVarQ14684(Swissvar)
Domains : Interpro (SRS)Nop52   
Domains : Interpro (EBI)Nop52   
Related proteins : CluSTrQ14684
Domain families : Pfam (SRS)Nop52 (PF05997)   
Domain families : Pfam (Sanger)Nop52 (PF05997)   
Domain families : Pfam (NCBI)pfam05997   
DMDM23076
Blocks (Seattle)Q14684
Human Protein AtlasENSG00000160208
HPRD10009
IPIIPI00290952   IPI00032374   
Protein Interaction databases
DIP (DOE-UCLA)Q14684
IntAct (EBI)Q14684
FunCoupENSG00000160208
REACTOMERRP1B
Protein Interaction Database23076
BioGRIDRRP1B
InParanoidQ14684
Interologous Interaction database Q14684
IntegromeDBRRP1B
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RRP1B
SNP (GeneSNP Utah)RRP1B
SNP : HGBaseRRP1B
Genetic variants : HAPMAPRRP1B
Somatic Mutations in Cancer : COSMICRRP1B 
CONAN: Copy Number AnalysisRRP1B 
Mutations and Diseases : HGMDRRP1B
OMIM610654   
GENETests610654   
Disease Genetic AssociationRRP1B
Huge Navigator RRP1B [HugePedia]  RRP1B [HugeCancerGEM]
Genomic VariantsRRP1B  RRP1B [DGVbeta]
snp3D : Map Gene to Disease23076
General knowledge
Homologs : HomoloGeneRRP1B
Homology/Alignments : Family Browser (UCSC)RRP1B
Phylogenetic Trees/Animal Genes : TreeFamRRP1B
Chemical/Protein Interactions : CTD23076
Chemical/Pharm GKB GenePA162402138
Clinical trialRRP1B
Cancer Resource (Charite)ENSG00000160208
Ontology : AmiGOnucleus  nucleolus  cytosol  rRNA processing  negative regulation of phosphatase activity  preribosome, small subunit precursor  
Ontology : EGO-EBInucleus  nucleolus  cytosol  rRNA processing  negative regulation of phosphatase activity  preribosome, small subunit precursor  
Other databases
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
PubGeneRRP1B
iHOPRRP1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:40:16 CEST 2013
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