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RRP36 (ribosomal RNA processing 36)

Identity

Alias_namesC6orf153
chromosome 6 open reading frame 153
ribosomal RNA processing 36 homolog (S. cerevisiae)
Alias_symbol (synonym)dJ20C7.4
Other alias
HGNC (Hugo) RRP36
LocusID (NCBI) 88745
Atlas_Id 72894
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 43021602 and ends at 43029599 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RRP36 (6p21.1) / RRP36 (6p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RRP36   21374
Cards
Entrez_Gene (NCBI)RRP36  88745  ribosomal RNA processing 36
AliasesC6orf153; dJ20C7.4
GeneCards (Weizmann)RRP36
Ensembl hg19 (Hinxton)ENSG00000124541 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124541 [Gene_View]  ENSG00000124541 [Sequence]  chr6:43021602-43029599 [Contig_View]  RRP36 [Vega]
ICGC DataPortalENSG00000124541
TCGA cBioPortalRRP36
AceView (NCBI)RRP36
Genatlas (Paris)RRP36
WikiGenes88745
SOURCE (Princeton)RRP36
Genetics Home Reference (NIH)RRP36
Genomic and cartography
GoldenPath hg38 (UCSC)RRP36  -     chr6:43021602-43029599 +  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RRP36  -     6p21.1   [Description]    (hg19-Feb_2009)
EnsemblRRP36 - 6p21.1 [CytoView hg19]  RRP36 - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBIRRP36 [Mapview hg19]  RRP36 [Mapview hg38]
OMIM613475   
Gene and transcription
Genbank (Entrez)AF161371 AK313816 BC006293 BC011933 BI828671
RefSeq transcript (Entrez)NM_001329704 NM_033112
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RRP36
Cluster EST : UnigeneHs.309231 [ NCBI ]
CGAP (NCI)Hs.309231
Alternative Splicing GalleryENSG00000124541
Gene ExpressionRRP36 [ NCBI-GEO ]   RRP36 [ EBI - ARRAY_EXPRESS ]   RRP36 [ SEEK ]   RRP36 [ MEM ]
Gene Expression Viewer (FireBrowse)RRP36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)88745
GTEX Portal (Tissue expression)RRP36
Human Protein AtlasENSG00000124541-RRP36 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EU6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EU6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EU6
Splice isoforms : SwissVarQ96EU6
PhosPhoSitePlusQ96EU6
Domains : Interpro (EBI)RRP36   
Domain families : Pfam (Sanger)DUF947 (PF06102)   
Domain families : Pfam (NCBI)pfam06102   
Conserved Domain (NCBI)RRP36
DMDM Disease mutations88745
Blocks (Seattle)RRP36
SuperfamilyQ96EU6
Human Protein Atlas [tissue]ENSG00000124541-RRP36 [tissue]
Peptide AtlasQ96EU6
HPRD12859
IPIIPI00106638   IPI00787473   
Protein Interaction databases
DIP (DOE-UCLA)Q96EU6
IntAct (EBI)Q96EU6
FunCoupENSG00000124541
BioGRIDRRP36
STRING (EMBL)RRP36
ZODIACRRP36
Ontologies - Pathways
QuickGOQ96EU6
Ontology : AmiGOmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  cleavage involved in rRNA processing  RNA binding  nucleus  nucleoplasm  nucleolus  rRNA processing  rRNA processing  90S preribosome  ribosomal small subunit biogenesis  
Ontology : EGO-EBImaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  cleavage involved in rRNA processing  RNA binding  nucleus  nucleoplasm  nucleolus  rRNA processing  rRNA processing  90S preribosome  ribosomal small subunit biogenesis  
NDEx NetworkRRP36
Atlas of Cancer Signalling NetworkRRP36
Wikipedia pathwaysRRP36
Orthology - Evolution
OrthoDB88745
GeneTree (enSembl)ENSG00000124541
Phylogenetic Trees/Animal Genes : TreeFamRRP36
HOVERGENQ96EU6
HOGENOMQ96EU6
Homologs : HomoloGeneRRP36
Homology/Alignments : Family Browser (UCSC)RRP36
Gene fusions - Rearrangements
Fusion : QuiverRRP36
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRP36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRP36
dbVarRRP36
ClinVarRRP36
1000_GenomesRRP36 
Exome Variant ServerRRP36
ExAC (Exome Aggregation Consortium)ENSG00000124541
GNOMAD BrowserENSG00000124541
Varsome BrowserRRP36
Genetic variants : HAPMAP88745
Genomic Variants (DGV)RRP36 [DGVbeta]
DECIPHERRRP36 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRRP36 
Mutations
ICGC Data PortalRRP36 
TCGA Data PortalRRP36 
Broad Tumor PortalRRP36
OASIS PortalRRP36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRRP36  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRRP36
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRP36
DgiDB (Drug Gene Interaction Database)RRP36
DoCM (Curated mutations)RRP36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRP36 (select a term)
intoGenRRP36
Cancer3DRRP36(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613475   
Orphanet
DisGeNETRRP36
MedgenRRP36
Genetic Testing Registry RRP36
NextProtQ96EU6 [Medical]
TSGene88745
GENETestsRRP36
Target ValidationRRP36
Huge Navigator RRP36 [HugePedia]
snp3D : Map Gene to Disease88745
BioCentury BCIQRRP36
ClinGenRRP36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD88745
Chemical/Pharm GKB GenePA165618219
Clinical trialRRP36
Miscellaneous
canSAR (ICR)RRP36 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRP36
EVEXRRP36
GoPubMedRRP36
iHOPRRP36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:27:45 CEST 2018

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