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RRP7A (ribosomal RNA processing 7 homolog A)

Identity

Alias_namesribosomal RNA processing 7 homolog A (S. cerevisiae)
Alias_symbol (synonym)CGI-96
Other aliasBK126B4.3
HGNC (Hugo) RRP7A
LocusID (NCBI) 27341
Atlas_Id 72895
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 42508335 and ends at 42519823 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC167 (6p21.2) / RRP7A (22q13.2)RRP7A (22q13.2) / ZNF395 (8p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RRP7A   24286
Cards
Entrez_Gene (NCBI)RRP7A  27341  ribosomal RNA processing 7 homolog A
AliasesBK126B4.3; CGI-96
GeneCards (Weizmann)RRP7A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:42508335-42519823 [Contig_View]  RRP7A [Vega]
TCGA cBioPortalRRP7A
AceView (NCBI)RRP7A
Genatlas (Paris)RRP7A
WikiGenes27341
SOURCE (Princeton)RRP7A
Genetics Home Reference (NIH)RRP7A
Genomic and cartography
GoldenPath hg38 (UCSC)RRP7A  -     chr22:42508335-42519823 -  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RRP7A  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblRRP7A - 22q13.2 [CytoView hg19]  RRP7A - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBIRRP7A [Mapview hg19]  RRP7A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092492 AK314650 AY039240 BC031838 BC035992
RefSeq transcript (Entrez)NM_015703
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RRP7A
Cluster EST : UnigeneHs.745006 [ NCBI ]
CGAP (NCI)Hs.745006
Gene ExpressionRRP7A [ NCBI-GEO ]   RRP7A [ EBI - ARRAY_EXPRESS ]   RRP7A [ SEEK ]   RRP7A [ MEM ]
Gene Expression Viewer (FireBrowse)RRP7A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27341
GTEX Portal (Tissue expression)RRP7A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3A4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3A4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3A4
Splice isoforms : SwissVarQ9Y3A4
PhosPhoSitePlusQ9Y3A4
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom    RRP7   
Domain families : Pfam (Sanger)RRP7 (PF12923)   
Domain families : Pfam (NCBI)pfam12923   
Conserved Domain (NCBI)RRP7A
DMDM Disease mutations27341
Blocks (Seattle)RRP7A
SuperfamilyQ9Y3A4
Peptide AtlasQ9Y3A4
HPRD13043
IPIIPI00879006   IPI00956739   IPI00877976   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3A4
IntAct (EBI)Q9Y3A4
BioGRIDRRP7A
STRING (EMBL)RRP7A
ZODIACRRP7A
Ontologies - Pathways
QuickGOQ9Y3A4
Ontology : AmiGOribosomal small subunit assembly  blastocyst formation  RNA binding  protein binding  nucleoplasm  cytoplasm  rRNA processing  rRNA processing  CURI complex  UTP-C complex  
Ontology : EGO-EBIribosomal small subunit assembly  blastocyst formation  RNA binding  protein binding  nucleoplasm  cytoplasm  rRNA processing  rRNA processing  CURI complex  UTP-C complex  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkRRP7A
Atlas of Cancer Signalling NetworkRRP7A
Wikipedia pathwaysRRP7A
Orthology - Evolution
OrthoDB27341
Phylogenetic Trees/Animal Genes : TreeFamRRP7A
HOVERGENQ9Y3A4
HOGENOMQ9Y3A4
Homologs : HomoloGeneRRP7A
Homology/Alignments : Family Browser (UCSC)RRP7A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRP7A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRP7A
dbVarRRP7A
ClinVarRRP7A
1000_GenomesRRP7A 
Exome Variant ServerRRP7A
ExAC (Exome Aggregation Consortium)RRP7A (select the gene name)
Genetic variants : HAPMAP27341
Genomic Variants (DGV)RRP7A [DGVbeta]
DECIPHERRRP7A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRRP7A 
Mutations
ICGC Data PortalRRP7A 
TCGA Data PortalRRP7A 
Broad Tumor PortalRRP7A
OASIS PortalRRP7A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRRP7A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRRP7A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRP7A
DgiDB (Drug Gene Interaction Database)RRP7A
DoCM (Curated mutations)RRP7A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRP7A (select a term)
intoGenRRP7A
Cancer3DRRP7A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRRP7A
Genetic Testing Registry RRP7A
NextProtQ9Y3A4 [Medical]
TSGene27341
GENETestsRRP7A
Target ValidationRRP7A
Huge Navigator RRP7A [HugePedia]
snp3D : Map Gene to Disease27341
BioCentury BCIQRRP7A
ClinGenRRP7A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27341
Chemical/Pharm GKB GenePA162402175
Clinical trialRRP7A
Miscellaneous
canSAR (ICR)RRP7A (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRP7A
EVEXRRP7A
GoPubMedRRP7A
iHOPRRP7A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:35 CEST 2017

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