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RRP7BP (ribosomal RNA processing 7 homolog B, pseudogene)

Identity

Alias_namesRRP7B
ribosomal RNA processing 7 homolog B (S. cerevisiae)
ribosomal RNA processing 7 homolog B (S. cerevisiae), pseudogene
Alias_symbol (synonym)dJ222E13.2
Other alias
HGNC (Hugo) RRP7BP
LocusID (NCBI) 91695
Atlas_Id 77045
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 42573260 and ends at 42582011 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RRP7BP (22q13.2) / KAT6B (10q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RRP7BP   30454
Cards
Entrez_Gene (NCBI)RRP7BP  91695  ribosomal RNA processing 7 homolog B, pseudogene
AliasesRRP7B; dJ222E13.2
GeneCards (Weizmann)RRP7BP
Ensembl hg19 (Hinxton)ENSG00000182841 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182841 [Gene_View]  chr22:42573260-42582011 [Contig_View]  RRP7BP [Vega]
ICGC DataPortalENSG00000182841
TCGA cBioPortalRRP7BP
AceView (NCBI)RRP7BP
Genatlas (Paris)RRP7BP
WikiGenes91695
SOURCE (Princeton)RRP7BP
Genetics Home Reference (NIH)RRP7BP
Genomic and cartography
GoldenPath hg38 (UCSC)RRP7BP  -     chr22:42573260-42582011 -  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RRP7BP  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblRRP7BP - 22q13.2 [CytoView hg19]  RRP7BP - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBIRRP7BP [Mapview hg19]  RRP7BP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074492 AK098201 AL157851 BC007736 BC014647
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RRP7BP
Cluster EST : UnigeneHs.534041 [ NCBI ]
CGAP (NCI)Hs.534041
Alternative Splicing GalleryENSG00000182841
Gene ExpressionRRP7BP [ NCBI-GEO ]   RRP7BP [ EBI - ARRAY_EXPRESS ]   RRP7BP [ SEEK ]   RRP7BP [ MEM ]
Gene Expression Viewer (FireBrowse)RRP7BP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91695
GTEX Portal (Tissue expression)RRP7BP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NSQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NSQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NSQ0
Splice isoforms : SwissVarQ9NSQ0
PhosPhoSitePlusQ9NSQ0
Domains : Interpro (EBI)RRP7    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)RRP7 (PF12923)   
Domain families : Pfam (NCBI)pfam12923   
Conserved Domain (NCBI)RRP7BP
DMDM Disease mutations91695
Blocks (Seattle)RRP7BP
SuperfamilyQ9NSQ0
Human Protein AtlasENSG00000182841
Peptide AtlasQ9NSQ0
IPIIPI00186438   
Protein Interaction databases
DIP (DOE-UCLA)Q9NSQ0
IntAct (EBI)Q9NSQ0
FunCoupENSG00000182841
BioGRIDRRP7BP
STRING (EMBL)RRP7BP
ZODIACRRP7BP
Ontologies - Pathways
QuickGOQ9NSQ0
Ontology : AmiGOribosomal small subunit assembly  rRNA processing  CURI complex  UTP-C complex  
Ontology : EGO-EBIribosomal small subunit assembly  rRNA processing  CURI complex  UTP-C complex  
NDEx NetworkRRP7BP
Atlas of Cancer Signalling NetworkRRP7BP
Wikipedia pathwaysRRP7BP
Orthology - Evolution
OrthoDB91695
GeneTree (enSembl)ENSG00000182841
Phylogenetic Trees/Animal Genes : TreeFamRRP7BP
HOVERGENQ9NSQ0
HOGENOMQ9NSQ0
Homologs : HomoloGeneRRP7BP
Homology/Alignments : Family Browser (UCSC)RRP7BP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRP7BP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRP7BP
dbVarRRP7BP
ClinVarRRP7BP
1000_GenomesRRP7BP 
Exome Variant ServerRRP7BP
ExAC (Exome Aggregation Consortium)RRP7BP (select the gene name)
Genetic variants : HAPMAP91695
Genomic Variants (DGV)RRP7BP [DGVbeta]
DECIPHERRRP7BP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRRP7BP 
Mutations
ICGC Data PortalRRP7BP 
TCGA Data PortalRRP7BP 
Broad Tumor PortalRRP7BP
OASIS PortalRRP7BP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRRP7BP
BioMutasearch RRP7BP
DgiDB (Drug Gene Interaction Database)RRP7BP
DoCM (Curated mutations)RRP7BP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRP7BP (select a term)
intoGenRRP7BP
Cancer3DRRP7BP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRRP7BP
Genetic Testing Registry RRP7BP
NextProtQ9NSQ0 [Medical]
TSGene91695
GENETestsRRP7BP
Target ValidationRRP7BP
Huge Navigator RRP7BP [HugePedia]
snp3D : Map Gene to Disease91695
BioCentury BCIQRRP7BP
ClinGenRRP7BP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91695
Clinical trialRRP7BP
Miscellaneous
canSAR (ICR)RRP7BP (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRP7BP
EVEXRRP7BP
GoPubMedRRP7BP
iHOPRRP7BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:57 CEST 2017

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