Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RRP9 (ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast))

Identity

Alias_namesRNU3IP2
RNA, U3 small nucleolar interacting protein 2
Alias_symbol (synonym)U3-55K
Other alias
HGNC (Hugo) RRP9
LocusID (NCBI) 9136
Atlas_Id 72898
Location 3p21.2  [Link to chromosome band 3p21]
Location_base_pair Starts at 51933426 and ends at 51941941 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NOL11 (17q24.2) / RRP9 (3p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RRP9   16829
Cards
Entrez_Gene (NCBI)RRP9  9136  ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)
AliasesRNU3IP2; U3-55K
GeneCards (Weizmann)RRP9
Ensembl hg19 (Hinxton)ENSG00000114767 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114767 [Gene_View]  chr3:51933426-51941941 [Contig_View]  RRP9 [Vega]
ICGC DataPortalENSG00000114767
TCGA cBioPortalRRP9
AceView (NCBI)RRP9
Genatlas (Paris)RRP9
WikiGenes9136
SOURCE (Princeton)RRP9
Genetics Home Reference (NIH)RRP9
Genomic and cartography
GoldenPath hg38 (UCSC)RRP9  -     chr3:51933426-51941941 -  3p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RRP9  -     3p21.2   [Description]    (hg19-Feb_2009)
EnsemblRRP9 - 3p21.2 [CytoView hg19]  RRP9 - 3p21.2 [CytoView hg38]
Mapping of homologs : NCBIRRP9 [Mapview hg19]  RRP9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA465355 AJ001340 AK313696 BC001113 BC009879
RefSeq transcript (Entrez)NM_004704
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RRP9
Cluster EST : UnigeneHs.153768 [ NCBI ]
CGAP (NCI)Hs.153768
Alternative Splicing GalleryENSG00000114767
Gene ExpressionRRP9 [ NCBI-GEO ]   RRP9 [ EBI - ARRAY_EXPRESS ]   RRP9 [ SEEK ]   RRP9 [ MEM ]
Gene Expression Viewer (FireBrowse)RRP9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9136
GTEX Portal (Tissue expression)RRP9
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43818   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43818  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43818
Splice isoforms : SwissVarO43818
PhosPhoSitePlusO43818
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)RRP9
DMDM Disease mutations9136
Blocks (Seattle)RRP9
PDB (SRS)4J0W    4JXM   
PDB (PDBSum)4J0W    4JXM   
PDB (IMB)4J0W    4JXM   
PDB (RSDB)4J0W    4JXM   
Structural Biology KnowledgeBase4J0W    4JXM   
SCOP (Structural Classification of Proteins)4J0W    4JXM   
CATH (Classification of proteins structures)4J0W    4JXM   
SuperfamilyO43818
Human Protein AtlasENSG00000114767
Peptide AtlasO43818
HPRD08827
IPIIPI00217862   
Protein Interaction databases
DIP (DOE-UCLA)O43818
IntAct (EBI)O43818
FunCoupENSG00000114767
BioGRIDRRP9
STRING (EMBL)RRP9
ZODIACRRP9
Ontologies - Pathways
QuickGOO43818
Ontology : AmiGORNA binding  nucleoplasm  nucleolus  rRNA processing  rRNA processing  rRNA processing  box C/D snoRNP complex  small-subunit processome  U3 snoRNA binding  
Ontology : EGO-EBIRNA binding  nucleoplasm  nucleolus  rRNA processing  rRNA processing  rRNA processing  box C/D snoRNP complex  small-subunit processome  U3 snoRNA binding  
NDEx NetworkRRP9
Atlas of Cancer Signalling NetworkRRP9
Wikipedia pathwaysRRP9
Orthology - Evolution
OrthoDB9136
GeneTree (enSembl)ENSG00000114767
Phylogenetic Trees/Animal Genes : TreeFamRRP9
HOVERGENO43818
HOGENOMO43818
Homologs : HomoloGeneRRP9
Homology/Alignments : Family Browser (UCSC)RRP9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRP9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRP9
dbVarRRP9
ClinVarRRP9
1000_GenomesRRP9 
Exome Variant ServerRRP9
ExAC (Exome Aggregation Consortium)RRP9 (select the gene name)
Genetic variants : HAPMAP9136
Genomic Variants (DGV)RRP9 [DGVbeta]
DECIPHERRRP9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRRP9 
Mutations
ICGC Data PortalRRP9 
TCGA Data PortalRRP9 
Broad Tumor PortalRRP9
OASIS PortalRRP9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRRP9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRRP9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRP9
DgiDB (Drug Gene Interaction Database)RRP9
DoCM (Curated mutations)RRP9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRP9 (select a term)
intoGenRRP9
Cancer3DRRP9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRRP9
Genetic Testing Registry RRP9
NextProtO43818 [Medical]
TSGene9136
GENETestsRRP9
Target ValidationRRP9
Huge Navigator RRP9 [HugePedia]
snp3D : Map Gene to Disease9136
BioCentury BCIQRRP9
ClinGenRRP9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9136
Chemical/Pharm GKB GenePA162402176
Clinical trialRRP9
Miscellaneous
canSAR (ICR)RRP9 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRP9
EVEXRRP9
GoPubMedRRP9
iHOPRRP9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:36:58 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.