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RRS1 (ribosome biogenesis regulator homolog)

Identity

Alias_namesRRS1 ribosome biogenesis regulator homolog (S. cerevisiae)
Alias_symbol (synonym)KIAA0112
Other alias-
HGNC (Hugo) RRS1
LocusID (NCBI) 23212
Atlas_Id 72899
Location 8q13.1  [Link to chromosome band 8q13]
Location_base_pair Starts at 66429028 and ends at 66430733 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RRS1   17083
Cards
Entrez_Gene (NCBI)RRS1  23212  ribosome biogenesis regulator homolog
Aliases
GeneCards (Weizmann)RRS1
Ensembl hg19 (Hinxton)ENSG00000179041 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179041 [Gene_View]  chr8:66429028-66430733 [Contig_View]  RRS1 [Vega]
ICGC DataPortalENSG00000179041
TCGA cBioPortalRRS1
AceView (NCBI)RRS1
Genatlas (Paris)RRS1
WikiGenes23212
SOURCE (Princeton)RRS1
Genetics Home Reference (NIH)RRS1
Genomic and cartography
GoldenPath hg38 (UCSC)RRS1  -     chr8:66429028-66430733 +  8q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RRS1  -     8q13.1   [Description]    (hg19-Feb_2009)
EnsemblRRS1 - 8q13.1 [CytoView hg19]  RRS1 - 8q13.1 [CytoView hg38]
Mapping of homologs : NCBIRRS1 [Mapview hg19]  RRS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024716 BC001811 BC013043 D25218 DQ892772
RefSeq transcript (Entrez)NM_015169
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RRS1
Cluster EST : UnigeneHs.71827 [ NCBI ]
CGAP (NCI)Hs.71827
Alternative Splicing GalleryENSG00000179041
Gene ExpressionRRS1 [ NCBI-GEO ]   RRS1 [ EBI - ARRAY_EXPRESS ]   RRS1 [ SEEK ]   RRS1 [ MEM ]
Gene Expression Viewer (FireBrowse)RRS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23212
GTEX Portal (Tissue expression)RRS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15050   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15050  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15050
Splice isoforms : SwissVarQ15050
PhosPhoSitePlusQ15050
Domains : Interpro (EBI)Ribosom_reg   
Domain families : Pfam (Sanger)RRS1 (PF04939)   
Domain families : Pfam (NCBI)pfam04939   
Conserved Domain (NCBI)RRS1
DMDM Disease mutations23212
Blocks (Seattle)RRS1
SuperfamilyQ15050
Human Protein AtlasENSG00000179041
Peptide AtlasQ15050
HPRD15277
IPIIPI00014253   
Protein Interaction databases
DIP (DOE-UCLA)Q15050
IntAct (EBI)Q15050
FunCoupENSG00000179041
BioGRIDRRS1
STRING (EMBL)RRS1
ZODIACRRS1
Ontologies - Pathways
QuickGOQ15050
Ontology : AmiGOribosomal large subunit export from nucleus  endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  condensed nuclear chromosome  fibrillar center  hematopoietic progenitor cell differentiation  RNA binding  protein binding  nucleus  nucleolus  endoplasmic reticulum  mitotic metaphase plate congression  preribosome, large subunit precursor  ribosomal large subunit biogenesis  
Ontology : EGO-EBIribosomal large subunit export from nucleus  endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  condensed nuclear chromosome  fibrillar center  hematopoietic progenitor cell differentiation  RNA binding  protein binding  nucleus  nucleolus  endoplasmic reticulum  mitotic metaphase plate congression  preribosome, large subunit precursor  ribosomal large subunit biogenesis  
NDEx NetworkRRS1
Atlas of Cancer Signalling NetworkRRS1
Wikipedia pathwaysRRS1
Orthology - Evolution
OrthoDB23212
GeneTree (enSembl)ENSG00000179041
Phylogenetic Trees/Animal Genes : TreeFamRRS1
HOVERGENQ15050
HOGENOMQ15050
Homologs : HomoloGeneRRS1
Homology/Alignments : Family Browser (UCSC)RRS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRS1
dbVarRRS1
ClinVarRRS1
1000_GenomesRRS1 
Exome Variant ServerRRS1
ExAC (Exome Aggregation Consortium)RRS1 (select the gene name)
Genetic variants : HAPMAP23212
Genomic Variants (DGV)RRS1 [DGVbeta]
DECIPHERRRS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRRS1 
Mutations
ICGC Data PortalRRS1 
TCGA Data PortalRRS1 
Broad Tumor PortalRRS1
OASIS PortalRRS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRRS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRRS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRS1
DgiDB (Drug Gene Interaction Database)RRS1
DoCM (Curated mutations)RRS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRS1 (select a term)
intoGenRRS1
Cancer3DRRS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRRS1
Genetic Testing Registry RRS1
NextProtQ15050 [Medical]
TSGene23212
GENETestsRRS1
Target ValidationRRS1
Huge Navigator RRS1 [HugePedia]
snp3D : Map Gene to Disease23212
BioCentury BCIQRRS1
ClinGenRRS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23212
Chemical/Pharm GKB GenePA134993138
Clinical trialRRS1
Miscellaneous
canSAR (ICR)RRS1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRS1
EVEXRRS1
GoPubMedRRS1
iHOPRRS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:58 CEST 2017

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