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RSAD1 (radical S-adenosyl methionine domain containing 1)

Identity

Alias_symbol (synonym)FLJ11164
Other alias-
HGNC (Hugo) RSAD1
LocusID (NCBI) 55316
Atlas_Id 72901
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 50478800 and ends at 50485980 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RSAD1 (17q21.33) / RSAD1 (17q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RSAD1   25634
Cards
Entrez_Gene (NCBI)RSAD1  55316  radical S-adenosyl methionine domain containing 1
Aliases
GeneCards (Weizmann)RSAD1
Ensembl hg19 (Hinxton)ENSG00000136444 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136444 [Gene_View]  chr17:50478800-50485980 [Contig_View]  RSAD1 [Vega]
ICGC DataPortalENSG00000136444
TCGA cBioPortalRSAD1
AceView (NCBI)RSAD1
Genatlas (Paris)RSAD1
WikiGenes55316
SOURCE (Princeton)RSAD1
Genetics Home Reference (NIH)RSAD1
Genomic and cartography
GoldenPath hg38 (UCSC)RSAD1  -     chr17:50478800-50485980 +  17q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RSAD1  -     17q21.33   [Description]    (hg19-Feb_2009)
EnsemblRSAD1 - 17q21.33 [CytoView hg19]  RSAD1 - 17q21.33 [CytoView hg38]
Mapping of homologs : NCBIRSAD1 [Mapview hg19]  RSAD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK002026 AK022105 AK024628 AK222472 AK293814
RefSeq transcript (Entrez)NM_018346
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RSAD1
Cluster EST : UnigeneHs.8033 [ NCBI ]
CGAP (NCI)Hs.8033
Alternative Splicing GalleryENSG00000136444
Gene ExpressionRSAD1 [ NCBI-GEO ]   RSAD1 [ EBI - ARRAY_EXPRESS ]   RSAD1 [ SEEK ]   RSAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)RSAD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55316
GTEX Portal (Tissue expression)RSAD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HA92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HA92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HA92
Splice isoforms : SwissVarQ9HA92
Catalytic activity : Enzyme1.3.99.- [ Enzyme-Expasy ]   1.3.99.-1.3.99.- [ IntEnz-EBI ]   1.3.99.- [ BRENDA ]   1.3.99.- [ KEGG ]   
PhosPhoSitePlusQ9HA92
Domains : Interpro (EBI)Coprogen_oxidase_HemN-rel    Elp3/MiaB/NifB    HemN_C    rSAM    rSAM_horseshoe   
Domain families : Pfam (Sanger)HemN_C (PF06969)    Radical_SAM (PF04055)   
Domain families : Pfam (NCBI)pfam06969    pfam04055   
Domain families : Smart (EMBL)Elp3 (SM00729)  
Conserved Domain (NCBI)RSAD1
DMDM Disease mutations55316
Blocks (Seattle)RSAD1
SuperfamilyQ9HA92
Human Protein AtlasENSG00000136444
Peptide AtlasQ9HA92
HPRD07737
IPIIPI00550335   IPI00910968   IPI00910895   IPI00966383   IPI00982446   
Protein Interaction databases
DIP (DOE-UCLA)Q9HA92
IntAct (EBI)Q9HA92
FunCoupENSG00000136444
BioGRIDRSAD1
STRING (EMBL)RSAD1
ZODIACRSAD1
Ontologies - Pathways
QuickGOQ9HA92
Ontology : AmiGOcoproporphyrinogen oxidase activity  mitochondrion  porphyrin-containing compound biosynthetic process  metal ion binding  4 iron, 4 sulfur cluster binding  oxidation-reduction process  
Ontology : EGO-EBIcoproporphyrinogen oxidase activity  mitochondrion  porphyrin-containing compound biosynthetic process  metal ion binding  4 iron, 4 sulfur cluster binding  oxidation-reduction process  
NDEx NetworkRSAD1
Atlas of Cancer Signalling NetworkRSAD1
Wikipedia pathwaysRSAD1
Orthology - Evolution
OrthoDB55316
GeneTree (enSembl)ENSG00000136444
Phylogenetic Trees/Animal Genes : TreeFamRSAD1
HOVERGENQ9HA92
HOGENOMQ9HA92
Homologs : HomoloGeneRSAD1
Homology/Alignments : Family Browser (UCSC)RSAD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRSAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RSAD1
dbVarRSAD1
ClinVarRSAD1
1000_GenomesRSAD1 
Exome Variant ServerRSAD1
ExAC (Exome Aggregation Consortium)RSAD1 (select the gene name)
Genetic variants : HAPMAP55316
Genomic Variants (DGV)RSAD1 [DGVbeta]
DECIPHERRSAD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRSAD1 
Mutations
ICGC Data PortalRSAD1 
TCGA Data PortalRSAD1 
Broad Tumor PortalRSAD1
OASIS PortalRSAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRSAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRSAD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch RSAD1
DgiDB (Drug Gene Interaction Database)RSAD1
DoCM (Curated mutations)RSAD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RSAD1 (select a term)
intoGenRSAD1
Cancer3DRSAD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRSAD1
Genetic Testing Registry RSAD1
NextProtQ9HA92 [Medical]
TSGene55316
GENETestsRSAD1
Target ValidationRSAD1
Huge Navigator RSAD1 [HugePedia]
snp3D : Map Gene to Disease55316
BioCentury BCIQRSAD1
ClinGenRSAD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55316
Chemical/Pharm GKB GenePA134945325
Clinical trialRSAD1
Miscellaneous
canSAR (ICR)RSAD1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRSAD1
EVEXRSAD1
GoPubMedRSAD1
iHOPRSAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:36 CEST 2017

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