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RSAD2 (radical S-adenosyl methionine domain containing 2)

Identity

Alias_symbol (synonym)cig5
viperin
vig1
Other alias2510004L01Rik
cig33
HGNC (Hugo) RSAD2
LocusID (NCBI) 91543
Atlas_Id 54594
Location 2p25.2  [Link to chromosome band 2p25]
Location_base_pair Starts at 7017796 and ends at 7038363 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LYZ (12q15) / RSAD2 (2p25.2)RSAD2 (2p25.2) / ELMOD3 (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RSAD2   30908
Cards
Entrez_Gene (NCBI)RSAD2  91543  radical S-adenosyl methionine domain containing 2
Aliases2510004L01Rik; cig33; cig5; vig1
GeneCards (Weizmann)RSAD2
Ensembl hg19 (Hinxton)ENSG00000134321 [Gene_View]  chr2:7017796-7038363 [Contig_View]  RSAD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000134321 [Gene_View]  chr2:7017796-7038363 [Contig_View]  RSAD2 [Vega]
ICGC DataPortalENSG00000134321
TCGA cBioPortalRSAD2
AceView (NCBI)RSAD2
Genatlas (Paris)RSAD2
WikiGenes91543
SOURCE (Princeton)RSAD2
Genetics Home Reference (NIH)RSAD2
Genomic and cartography
GoldenPath hg19 (UCSC)RSAD2  -     chr2:7017796-7038363 +  2p25.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RSAD2  -     2p25.2   [Description]    (hg38-Dec_2013)
EnsemblRSAD2 - 2p25.2 [CytoView hg19]  RSAD2 - 2p25.2 [CytoView hg38]
Mapping of homologs : NCBIRSAD2 [Mapview hg19]  RSAD2 [Mapview hg38]
OMIM607810   
Gene and transcription
Genbank (Entrez)AF026942 AF442151 AK300085 AK312670 BC017969
RefSeq transcript (Entrez)NM_080657
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005334 NW_004929298
Consensus coding sequences : CCDS (NCBI)RSAD2
Cluster EST : UnigeneHs.17518 [ NCBI ]
CGAP (NCI)Hs.17518
Alternative Splicing GalleryENSG00000134321
Gene ExpressionRSAD2 [ NCBI-GEO ]   RSAD2 [ EBI - ARRAY_EXPRESS ]   RSAD2 [ SEEK ]   RSAD2 [ MEM ]
Gene Expression Viewer (FireBrowse)RSAD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91543
GTEX Portal (Tissue expression)RSAD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXG1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXG1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXG1
Splice isoforms : SwissVarQ8WXG1
PhosPhoSitePlusQ8WXG1
Domains : Interpro (EBI)Aldolase_TIM    Elp3/MiaB/NifB    rSAM    Viperin   
Domain families : Pfam (Sanger)Radical_SAM (PF04055)   
Domain families : Pfam (NCBI)pfam04055   
Domain families : Smart (EMBL)Elp3 (SM00729)  
Conserved Domain (NCBI)RSAD2
DMDM Disease mutations91543
Blocks (Seattle)RSAD2
SuperfamilyQ8WXG1
Human Protein AtlasENSG00000134321
Peptide AtlasQ8WXG1
HPRD07423
IPIIPI00291463   IPI01012759   IPI00893679   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXG1
IntAct (EBI)Q8WXG1
FunCoupENSG00000134321
BioGRIDRSAD2
STRING (EMBL)RSAD2
ZODIACRSAD2
Ontologies - Pathways
QuickGOQ8WXG1
Ontology : AmiGOcatalytic activity  protein binding  mitochondrion  mitochondrial outer membrane  mitochondrial inner membrane  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum membrane  Golgi apparatus  lipid particle  metabolic process  response to virus  viral process  positive regulation of toll-like receptor 7 signaling pathway  positive regulation of toll-like receptor 9 signaling pathway  CD4-positive, alpha-beta T cell activation  CD4-positive, alpha-beta T cell differentiation  protein self-association  negative regulation of viral genome replication  metal ion binding  negative regulation of protein secretion  4 iron, 4 sulfur cluster binding  defense response to virus  type I interferon signaling pathway  positive regulation of T-helper 2 cell cytokine production  
Ontology : EGO-EBIcatalytic activity  protein binding  mitochondrion  mitochondrial outer membrane  mitochondrial inner membrane  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum membrane  Golgi apparatus  lipid particle  metabolic process  response to virus  viral process  positive regulation of toll-like receptor 7 signaling pathway  positive regulation of toll-like receptor 9 signaling pathway  CD4-positive, alpha-beta T cell activation  CD4-positive, alpha-beta T cell differentiation  protein self-association  negative regulation of viral genome replication  metal ion binding  negative regulation of protein secretion  4 iron, 4 sulfur cluster binding  defense response to virus  type I interferon signaling pathway  positive regulation of T-helper 2 cell cytokine production  
Pathways : KEGGInfluenza A   
NDEx NetworkRSAD2
Atlas of Cancer Signalling NetworkRSAD2
Wikipedia pathwaysRSAD2
Orthology - Evolution
OrthoDB91543
GeneTree (enSembl)ENSG00000134321
Phylogenetic Trees/Animal Genes : TreeFamRSAD2
HOVERGENQ8WXG1
HOGENOMQ8WXG1
Homologs : HomoloGeneRSAD2
Homology/Alignments : Family Browser (UCSC)RSAD2
Gene fusions - Rearrangements
Fusion : MitelmanRSAD2/ELMOD3 [2p25.2/2p11.2]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRSAD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RSAD2
dbVarRSAD2
ClinVarRSAD2
1000_GenomesRSAD2 
Exome Variant ServerRSAD2
ExAC (Exome Aggregation Consortium)RSAD2 (select the gene name)
Genetic variants : HAPMAP91543
Genomic Variants (DGV)RSAD2 [DGVbeta]
DECIPHER (Syndromes)2:7017796-7038363  ENSG00000134321
CONAN: Copy Number AnalysisRSAD2 
Mutations
ICGC Data PortalRSAD2 
TCGA Data PortalRSAD2 
Broad Tumor PortalRSAD2
OASIS PortalRSAD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRSAD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRSAD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RSAD2
DgiDB (Drug Gene Interaction Database)RSAD2
DoCM (Curated mutations)RSAD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RSAD2 (select a term)
intoGenRSAD2
Cancer3DRSAD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607810   
Orphanet
MedgenRSAD2
Genetic Testing Registry RSAD2
NextProtQ8WXG1 [Medical]
TSGene91543
GENETestsRSAD2
Huge Navigator RSAD2 [HugePedia]
snp3D : Map Gene to Disease91543
BioCentury BCIQRSAD2
ClinGenRSAD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91543
Chemical/Pharm GKB GenePA134937442
Clinical trialRSAD2
Miscellaneous
canSAR (ICR)RSAD2 (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRSAD2
EVEXRSAD2
GoPubMedRSAD2
iHOPRSAD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:18:05 CEST 2017

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