Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RSBN1 (round spermatid basic protein 1)

Identity

Alias_symbol (synonym)FLJ11220
ROSBIN
Other alias
HGNC (Hugo) RSBN1
LocusID (NCBI) 54665
Atlas_Id 72902
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 114304454 and ends at 114355098 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RSBN1   25642
Cards
Entrez_Gene (NCBI)RSBN1  54665  round spermatid basic protein 1
AliasesROSBIN
GeneCards (Weizmann)RSBN1
Ensembl hg19 (Hinxton)ENSG00000081019 [Gene_View]  chr1:114304454-114355098 [Contig_View]  RSBN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000081019 [Gene_View]  chr1:114304454-114355098 [Contig_View]  RSBN1 [Vega]
ICGC DataPortalENSG00000081019
TCGA cBioPortalRSBN1
AceView (NCBI)RSBN1
Genatlas (Paris)RSBN1
WikiGenes54665
SOURCE (Princeton)RSBN1
Genetics Home Reference (NIH)RSBN1
Genomic and cartography
GoldenPath hg19 (UCSC)RSBN1  -     chr1:114304454-114355098 -  1p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RSBN1  -     1p13.2   [Description]    (hg38-Dec_2013)
EnsemblRSBN1 - 1p13.2 [CytoView hg19]  RSBN1 - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBIRSBN1 [Mapview hg19]  RSBN1 [Mapview hg38]
OMIM615858   
Gene and transcription
Genbank (Entrez)AA682921 AK002082 AK022166 AK292552 AL050064
RefSeq transcript (Entrez)NM_018364
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)RSBN1
Cluster EST : UnigeneHs.486285 [ NCBI ]
CGAP (NCI)Hs.486285
Alternative Splicing GalleryENSG00000081019
Gene ExpressionRSBN1 [ NCBI-GEO ]   RSBN1 [ EBI - ARRAY_EXPRESS ]   RSBN1 [ SEEK ]   RSBN1 [ MEM ]
Gene Expression Viewer (FireBrowse)RSBN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54665
GTEX Portal (Tissue expression)RSBN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWQ0
Splice isoforms : SwissVarQ5VWQ0
PhosPhoSitePlusQ5VWQ0
Domains : Interpro (EBI)RSBN1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RSBN1
DMDM Disease mutations54665
Blocks (Seattle)RSBN1
SuperfamilyQ5VWQ0
Human Protein AtlasENSG00000081019
Peptide AtlasQ5VWQ0
HPRD08561
IPIIPI00019999   IPI00855810   
Protein Interaction databases
DIP (DOE-UCLA)Q5VWQ0
IntAct (EBI)Q5VWQ0
FunCoupENSG00000081019
BioGRIDRSBN1
STRING (EMBL)RSBN1
ZODIACRSBN1
Ontologies - Pathways
QuickGOQ5VWQ0
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkRSBN1
Atlas of Cancer Signalling NetworkRSBN1
Wikipedia pathwaysRSBN1
Orthology - Evolution
OrthoDB54665
GeneTree (enSembl)ENSG00000081019
Phylogenetic Trees/Animal Genes : TreeFamRSBN1
HOVERGENQ5VWQ0
HOGENOMQ5VWQ0
Homologs : HomoloGeneRSBN1
Homology/Alignments : Family Browser (UCSC)RSBN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRSBN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RSBN1
dbVarRSBN1
ClinVarRSBN1
1000_GenomesRSBN1 
Exome Variant ServerRSBN1
ExAC (Exome Aggregation Consortium)RSBN1 (select the gene name)
Genetic variants : HAPMAP54665
Genomic Variants (DGV)RSBN1 [DGVbeta]
DECIPHER (Syndromes)1:114304454-114355098  ENSG00000081019
CONAN: Copy Number AnalysisRSBN1 
Mutations
ICGC Data PortalRSBN1 
TCGA Data PortalRSBN1 
Broad Tumor PortalRSBN1
OASIS PortalRSBN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRSBN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRSBN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RSBN1
DgiDB (Drug Gene Interaction Database)RSBN1
DoCM (Curated mutations)RSBN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RSBN1 (select a term)
intoGenRSBN1
Cancer3DRSBN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615858   
Orphanet
MedgenRSBN1
Genetic Testing Registry RSBN1
NextProtQ5VWQ0 [Medical]
TSGene54665
GENETestsRSBN1
Huge Navigator RSBN1 [HugePedia]
snp3D : Map Gene to Disease54665
BioCentury BCIQRSBN1
ClinGenRSBN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54665
Chemical/Pharm GKB GenePA134869532
Clinical trialRSBN1
Miscellaneous
canSAR (ICR)RSBN1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRSBN1
EVEXRSBN1
GoPubMedRSBN1
iHOPRSBN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:42:03 CET 2017

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