Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RSBN1L (round spermatid basic protein 1 like)

Identity

Alias_namesround spermatid basic protein 1-like
Alias_symbol (synonym)FLJ42526
FLJ45813
MGC71764
Other alias-
HGNC (Hugo) RSBN1L
LocusID (NCBI) 222194
Atlas_Id 53766
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 77696426 and ends at 77779803 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
APPBP2 (17q23.2) / RSBN1L (7q11.23)DTNBP1 (6p22.3) / RSBN1L (7q11.23)RSBN1L (7q11.23) / HGF (7q21.11)
ZNF217 (20q13.2) / RSBN1L (7q11.23)DTNBP1 6p22.3 / RSBN1L 7q11.23RSBN1L 7q11.23 / HGF 7q21.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RSBN1L   24765
Cards
Entrez_Gene (NCBI)RSBN1L  222194  round spermatid basic protein 1 like
Aliases
GeneCards (Weizmann)RSBN1L
Ensembl hg19 (Hinxton)ENSG00000187257 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187257 [Gene_View]  chr7:77696426-77779803 [Contig_View]  RSBN1L [Vega]
ICGC DataPortalENSG00000187257
TCGA cBioPortalRSBN1L
AceView (NCBI)RSBN1L
Genatlas (Paris)RSBN1L
WikiGenes222194
SOURCE (Princeton)RSBN1L
Genetics Home Reference (NIH)RSBN1L
Genomic and cartography
GoldenPath hg38 (UCSC)RSBN1L  -     chr7:77696426-77779803 +  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RSBN1L  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblRSBN1L - 7q11.23 [CytoView hg19]  RSBN1L - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBIRSBN1L [Mapview hg19]  RSBN1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124517 AK127713 BC046193 BC046353 BC059402
RefSeq transcript (Entrez)NM_198467
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RSBN1L
Cluster EST : UnigeneHs.592289 [ NCBI ]
CGAP (NCI)Hs.592289
Alternative Splicing GalleryENSG00000187257
Gene ExpressionRSBN1L [ NCBI-GEO ]   RSBN1L [ EBI - ARRAY_EXPRESS ]   RSBN1L [ SEEK ]   RSBN1L [ MEM ]
Gene Expression Viewer (FireBrowse)RSBN1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)222194
GTEX Portal (Tissue expression)RSBN1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PCB5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PCB5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PCB5
Splice isoforms : SwissVarQ6PCB5
PhosPhoSitePlusQ6PCB5
Domains : Interpro (EBI)RSBN1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RSBN1L
DMDM Disease mutations222194
Blocks (Seattle)RSBN1L
SuperfamilyQ6PCB5
Human Protein AtlasENSG00000187257
Peptide AtlasQ6PCB5
HPRD15278
IPIIPI00925255   IPI00856118   IPI00917835   IPI00925556   IPI00925778   
Protein Interaction databases
DIP (DOE-UCLA)Q6PCB5
IntAct (EBI)Q6PCB5
FunCoupENSG00000187257
BioGRIDRSBN1L
STRING (EMBL)RSBN1L
ZODIACRSBN1L
Ontologies - Pathways
QuickGOQ6PCB5
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkRSBN1L
Atlas of Cancer Signalling NetworkRSBN1L
Wikipedia pathwaysRSBN1L
Orthology - Evolution
OrthoDB222194
GeneTree (enSembl)ENSG00000187257
Phylogenetic Trees/Animal Genes : TreeFamRSBN1L
HOVERGENQ6PCB5
HOGENOMQ6PCB5
Homologs : HomoloGeneRSBN1L
Homology/Alignments : Family Browser (UCSC)RSBN1L
Gene fusions - Rearrangements
Fusion : MitelmanDTNBP1/RSBN1L [6p22.3/7q11.23]  [t(6;7)(p22;q11)]  
Fusion : MitelmanRSBN1L/HGF [7q11.23/7q21.11]  [t(7;7)(q11;q21)]  
Fusion: TCGADTNBP1 6p22.3 RSBN1L 7q11.23 BRCA
Fusion: TCGARSBN1L 7q11.23 HGF 7q21.11 SKCM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRSBN1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RSBN1L
dbVarRSBN1L
ClinVarRSBN1L
1000_GenomesRSBN1L 
Exome Variant ServerRSBN1L
ExAC (Exome Aggregation Consortium)RSBN1L (select the gene name)
Genetic variants : HAPMAP222194
Genomic Variants (DGV)RSBN1L [DGVbeta]
DECIPHERRSBN1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRSBN1L 
Mutations
ICGC Data PortalRSBN1L 
TCGA Data PortalRSBN1L 
Broad Tumor PortalRSBN1L
OASIS PortalRSBN1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRSBN1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRSBN1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RSBN1L
DgiDB (Drug Gene Interaction Database)RSBN1L
DoCM (Curated mutations)RSBN1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RSBN1L (select a term)
intoGenRSBN1L
Cancer3DRSBN1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRSBN1L
Genetic Testing Registry RSBN1L
NextProtQ6PCB5 [Medical]
TSGene222194
GENETestsRSBN1L
Target ValidationRSBN1L
Huge Navigator RSBN1L [HugePedia]
snp3D : Map Gene to Disease222194
BioCentury BCIQRSBN1L
ClinGenRSBN1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD222194
Chemical/Pharm GKB GenePA134948776
Clinical trialRSBN1L
Miscellaneous
canSAR (ICR)RSBN1L (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRSBN1L
EVEXRSBN1L
GoPubMedRSBN1L
iHOPRSBN1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:54:04 CEST 2017

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