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RSC1A1 (regulator of solute carriers 1)

Identity

Alias_namesregulatory solute carrier protein
Alias_symbol (synonym)RS1
Other alias
HGNC (Hugo) RSC1A1
LocusID (NCBI) 6248
Atlas_Id 42177
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 15659713 and ends at 15662030 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RSC1A1   10458
Cards
Entrez_Gene (NCBI)RSC1A1  6248  regulator of solute carriers 1
AliasesRS1
GeneCards (Weizmann)RSC1A1
Ensembl hg19 (Hinxton)ENSG00000215695 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215695 [Gene_View]  chr1:15659713-15662030 [Contig_View]  RSC1A1 [Vega]
ICGC DataPortalENSG00000215695
TCGA cBioPortalRSC1A1
AceView (NCBI)RSC1A1
Genatlas (Paris)RSC1A1
WikiGenes6248
SOURCE (Princeton)RSC1A1
Genetics Home Reference (NIH)RSC1A1
Genomic and cartography
GoldenPath hg38 (UCSC)RSC1A1  -     chr1:15659713-15662030 +  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RSC1A1  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblRSC1A1 - 1p36.21 [CytoView hg19]  RSC1A1 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIRSC1A1 [Mapview hg19]  RSC1A1 [Mapview hg38]
OMIM601966   
Gene and transcription
Genbank (Entrez)AI240658 AK314753 BC152937 CN345288 CR999543
RefSeq transcript (Entrez)NM_006511
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RSC1A1
Cluster EST : UnigeneHs.718857 [ NCBI ]
CGAP (NCI)Hs.718857
Alternative Splicing GalleryENSG00000215695
Gene ExpressionRSC1A1 [ NCBI-GEO ]   RSC1A1 [ EBI - ARRAY_EXPRESS ]   RSC1A1 [ SEEK ]   RSC1A1 [ MEM ]
Gene Expression Viewer (FireBrowse)RSC1A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6248
GTEX Portal (Tissue expression)RSC1A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92681   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92681  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92681
Splice isoforms : SwissVarQ92681
PhosPhoSitePlusQ92681
Domaine pattern : Prosite (Expaxy)UBA (PS50030)   
Domains : Interpro (EBI)UBA   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)UBA (SM00165)  
Conserved Domain (NCBI)RSC1A1
DMDM Disease mutations6248
Blocks (Seattle)RSC1A1
SuperfamilyQ92681
Human Protein AtlasENSG00000215695
Peptide AtlasQ92681
HPRD15994
IPIIPI00008521   
Protein Interaction databases
DIP (DOE-UCLA)Q92681
IntAct (EBI)Q92681
FunCoupENSG00000215695
BioGRIDRSC1A1
STRING (EMBL)RSC1A1
ZODIACRSC1A1
Ontologies - Pathways
QuickGOQ92681
Ontology : AmiGOnucleoplasm  Golgi apparatus  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  transport  ion channel inhibitor activity  cell junction  negative regulation of transport  regulation of molecular function  
Ontology : EGO-EBInucleoplasm  Golgi apparatus  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  transport  ion channel inhibitor activity  cell junction  negative regulation of transport  regulation of molecular function  
NDEx NetworkRSC1A1
Atlas of Cancer Signalling NetworkRSC1A1
Wikipedia pathwaysRSC1A1
Orthology - Evolution
OrthoDB6248
GeneTree (enSembl)ENSG00000215695
Phylogenetic Trees/Animal Genes : TreeFamRSC1A1
HOVERGENQ92681
HOGENOMQ92681
Homologs : HomoloGeneRSC1A1
Homology/Alignments : Family Browser (UCSC)RSC1A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRSC1A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RSC1A1
dbVarRSC1A1
ClinVarRSC1A1
1000_GenomesRSC1A1 
Exome Variant ServerRSC1A1
ExAC (Exome Aggregation Consortium)RSC1A1 (select the gene name)
Genetic variants : HAPMAP6248
Genomic Variants (DGV)RSC1A1 [DGVbeta]
DECIPHERRSC1A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRSC1A1 
Mutations
ICGC Data PortalRSC1A1 
TCGA Data PortalRSC1A1 
Broad Tumor PortalRSC1A1
OASIS PortalRSC1A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRSC1A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRSC1A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RSC1A1
DgiDB (Drug Gene Interaction Database)RSC1A1
DoCM (Curated mutations)RSC1A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RSC1A1 (select a term)
intoGenRSC1A1
Cancer3DRSC1A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601966   
Orphanet
MedgenRSC1A1
Genetic Testing Registry RSC1A1
NextProtQ92681 [Medical]
TSGene6248
GENETestsRSC1A1
Target ValidationRSC1A1
Huge Navigator RSC1A1 [HugePedia]
snp3D : Map Gene to Disease6248
BioCentury BCIQRSC1A1
ClinGenRSC1A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6248
Chemical/Pharm GKB GenePA34872
Clinical trialRSC1A1
Miscellaneous
canSAR (ICR)RSC1A1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRSC1A1
EVEXRSC1A1
GoPubMedRSC1A1
iHOPRSC1A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:13:31 CEST 2017

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