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RSL1D1 (ribosomal L1 domain containing 1)

Identity

Alias (NCBI)CSIG
L12
PBK1
UTP30
HGNC (Hugo) RSL1D1
HGNC Alias symbPBK1
L12
DKFZP564M182
CSIG
UTP30
LocusID (NCBI) 26156
Atlas_Id 55605
Location 16p13.13  [Link to chromosome band 16p13]
Location_base_pair Starts at 11833850 and ends at 11851542 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RSL1D1 (16p13.13) / EIF4H (7q11.23)RSL1D1 (16p13.13) / RSL1D1 (16p13.13)TXNDC11 (16p13.13) / RSL1D1 (16p13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RSL1D1   24534
Cards
Entrez_Gene (NCBI)RSL1D1    ribosomal L1 domain containing 1
AliasesCSIG; L12; PBK1; UTP30
GeneCards (Weizmann)RSL1D1
Ensembl hg19 (Hinxton)ENSG00000171490 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171490 [Gene_View]  ENSG00000171490 [Sequence]  chr16:11833850-11851542 [Contig_View]  RSL1D1 [Vega]
ICGC DataPortalENSG00000171490
TCGA cBioPortalRSL1D1
AceView (NCBI)RSL1D1
Genatlas (Paris)RSL1D1
SOURCE (Princeton)RSL1D1
Genetics Home Reference (NIH)RSL1D1
Genomic and cartography
GoldenPath hg38 (UCSC)RSL1D1  -     chr16:11833850-11851542 -  16p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RSL1D1  -     16p13.13   [Description]    (hg19-Feb_2009)
GoldenPathRSL1D1 - 16p13.13 [CytoView hg19]  RSL1D1 - 16p13.13 [CytoView hg38]
ImmunoBaseENSG00000171490
Genome Data Viewer NCBIRSL1D1 [Mapview hg19]  
OMIM615874   
Gene and transcription
Genbank (Entrez)AF074987 AF083127 AJ007398 AK000822 AK025446
RefSeq transcript (Entrez)NM_015659
Consensus coding sequences : CCDS (NCBI)RSL1D1
Gene ExpressionRSL1D1 [ NCBI-GEO ]   RSL1D1 [ EBI - ARRAY_EXPRESS ]   RSL1D1 [ SEEK ]   RSL1D1 [ MEM ]
Gene Expression Viewer (FireBrowse)RSL1D1 [ Firebrowse - Broad ]
GenevisibleExpression of RSL1D1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26156
GTEX Portal (Tissue expression)RSL1D1
Human Protein AtlasENSG00000171490-RSL1D1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO76021   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO76021  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO76021
PhosPhoSitePlusO76021
Domains : Interpro (EBI)Ribosomal_L1-like    Ribosomal_L1/biogenesis    Ribosomal_L1_3-a/b-sand   
Domain families : Pfam (Sanger)Ribosomal_L1 (PF00687)   
Domain families : Pfam (NCBI)pfam00687   
Conserved Domain (NCBI)RSL1D1
SuperfamilyO76021
AlphaFold pdb e-kbO76021   
Human Protein Atlas [tissue]ENSG00000171490-RSL1D1 [tissue]
HPRD10897
Protein Interaction databases
DIP (DOE-UCLA)O76021
IntAct (EBI)O76021
BioGRIDRSL1D1
STRING (EMBL)RSL1D1
ZODIACRSL1D1
Ontologies - Pathways
QuickGOO76021
Ontology : AmiGOmaturation of LSU-rRNA  osteoblast differentiation  RNA binding  RNA binding  mRNA 3'-UTR binding  chromosome  nucleolus  membrane  90S preribosome  regulation of protein localization  regulation of apoptotic process  cadherin binding  mRNA 5'-UTR binding  regulation of cellular senescence  
Ontology : EGO-EBImaturation of LSU-rRNA  osteoblast differentiation  RNA binding  RNA binding  mRNA 3'-UTR binding  chromosome  nucleolus  membrane  90S preribosome  regulation of protein localization  regulation of apoptotic process  cadherin binding  mRNA 5'-UTR binding  regulation of cellular senescence  
NDEx NetworkRSL1D1
Atlas of Cancer Signalling NetworkRSL1D1
Wikipedia pathwaysRSL1D1
Orthology - Evolution
OrthoDB26156
GeneTree (enSembl)ENSG00000171490
Phylogenetic Trees/Animal Genes : TreeFamRSL1D1
Homologs : HomoloGeneRSL1D1
Homology/Alignments : Family Browser (UCSC)RSL1D1
Gene fusions - Rearrangements
Fusion : QuiverRSL1D1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRSL1D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RSL1D1
dbVarRSL1D1
ClinVarRSL1D1
MonarchRSL1D1
1000_GenomesRSL1D1 
Exome Variant ServerRSL1D1
GNOMAD BrowserENSG00000171490
Varsome BrowserRSL1D1
ACMGRSL1D1 variants
VarityO76021
Genomic Variants (DGV)RSL1D1 [DGVbeta]
DECIPHERRSL1D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRSL1D1 
Mutations
ICGC Data PortalRSL1D1 
TCGA Data PortalRSL1D1 
Broad Tumor PortalRSL1D1
OASIS PortalRSL1D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRSL1D1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRSL1D1
Mutations and Diseases : HGMDRSL1D1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRSL1D1
DgiDB (Drug Gene Interaction Database)RSL1D1
DoCM (Curated mutations)RSL1D1
CIViC (Clinical Interpretations of Variants in Cancer)RSL1D1
Cancer3DRSL1D1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615874   
Orphanet
DisGeNETRSL1D1
MedgenRSL1D1
Genetic Testing Registry RSL1D1
NextProtO76021 [Medical]
GENETestsRSL1D1
Target ValidationRSL1D1
Huge Navigator RSL1D1 [HugePedia]
ClinGenRSL1D1
Clinical trials, drugs, therapy
MyCancerGenomeRSL1D1
Protein Interactions : CTDRSL1D1
Pharm GKB GenePA142670966
PharosO76021
Clinical trialRSL1D1
Miscellaneous
canSAR (ICR)RSL1D1
HarmonizomeRSL1D1
DataMed IndexRSL1D1
Probes
Litterature
PubMed112 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRSL1D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:29:45 CEST 2021

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