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RSL1D1 (ribosomal L1 domain containing 1)

Identity

Alias_symbol (synonym)PBK1
L12
DKFZP564M182
CSIG
UTP30
Other alias
HGNC (Hugo) RSL1D1
LocusID (NCBI) 26156
Atlas_Id 55605
Location 16p13.13  [Link to chromosome band 16p13]
Location_base_pair Starts at 11834196 and ends at 11851585 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RSL1D1 (16p13.13) / EIF4H (7q11.23)RSL1D1 (16p13.13) / RSL1D1 (16p13.13)TXNDC11 (16p13.13) / RSL1D1 (16p13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RSL1D1   24534
Cards
Entrez_Gene (NCBI)RSL1D1  26156  ribosomal L1 domain containing 1
AliasesCSIG; L12; PBK1; UTP30
GeneCards (Weizmann)RSL1D1
Ensembl hg19 (Hinxton)ENSG00000171490 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171490 [Gene_View]  chr16:11834196-11851585 [Contig_View]  RSL1D1 [Vega]
ICGC DataPortalENSG00000171490
TCGA cBioPortalRSL1D1
AceView (NCBI)RSL1D1
Genatlas (Paris)RSL1D1
WikiGenes26156
SOURCE (Princeton)RSL1D1
Genetics Home Reference (NIH)RSL1D1
Genomic and cartography
GoldenPath hg38 (UCSC)RSL1D1  -     chr16:11834196-11851585 -  16p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RSL1D1  -     16p13.13   [Description]    (hg19-Feb_2009)
EnsemblRSL1D1 - 16p13.13 [CytoView hg19]  RSL1D1 - 16p13.13 [CytoView hg38]
Mapping of homologs : NCBIRSL1D1 [Mapview hg19]  RSL1D1 [Mapview hg38]
OMIM615874   
Gene and transcription
Genbank (Entrez)AF074987 AF083127 AJ007398 AK000822 AK025446
RefSeq transcript (Entrez)NM_015659
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RSL1D1
Cluster EST : UnigeneHs.401842 [ NCBI ]
CGAP (NCI)Hs.401842
Alternative Splicing GalleryENSG00000171490
Gene ExpressionRSL1D1 [ NCBI-GEO ]   RSL1D1 [ EBI - ARRAY_EXPRESS ]   RSL1D1 [ SEEK ]   RSL1D1 [ MEM ]
Gene Expression Viewer (FireBrowse)RSL1D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26156
GTEX Portal (Tissue expression)RSL1D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO76021   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO76021  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO76021
Splice isoforms : SwissVarO76021
PhosPhoSitePlusO76021
Domains : Interpro (EBI)Ribosomal_L1-like    Ribosomal_L1/biogenesis    Ribosomal_L1_2-a/b-sand   
Domain families : Pfam (Sanger)Ribosomal_L1 (PF00687)   
Domain families : Pfam (NCBI)pfam00687   
Conserved Domain (NCBI)RSL1D1
DMDM Disease mutations26156
Blocks (Seattle)RSL1D1
SuperfamilyO76021
Human Protein AtlasENSG00000171490
Peptide AtlasO76021
HPRD10897
IPIIPI00008708   IPI01016043   IPI00642046   
Protein Interaction databases
DIP (DOE-UCLA)O76021
IntAct (EBI)O76021
FunCoupENSG00000171490
BioGRIDRSL1D1
STRING (EMBL)RSL1D1
ZODIACRSL1D1
Ontologies - Pathways
QuickGOO76021
Ontology : AmiGOmaturation of LSU-rRNA  osteoblast differentiation  RNA binding  RNA binding  mRNA 3'-UTR binding  nucleolus  translation  membrane  cytosolic large ribosomal subunit  90S preribosome  regulation of protein localization  regulation of apoptotic process  cadherin binding  mRNA 5'-UTR binding  regulation of cellular senescence  
Ontology : EGO-EBImaturation of LSU-rRNA  osteoblast differentiation  RNA binding  RNA binding  mRNA 3'-UTR binding  nucleolus  translation  membrane  cytosolic large ribosomal subunit  90S preribosome  regulation of protein localization  regulation of apoptotic process  cadherin binding  mRNA 5'-UTR binding  regulation of cellular senescence  
NDEx NetworkRSL1D1
Atlas of Cancer Signalling NetworkRSL1D1
Wikipedia pathwaysRSL1D1
Orthology - Evolution
OrthoDB26156
GeneTree (enSembl)ENSG00000171490
Phylogenetic Trees/Animal Genes : TreeFamRSL1D1
HOVERGENO76021
HOGENOMO76021
Homologs : HomoloGeneRSL1D1
Homology/Alignments : Family Browser (UCSC)RSL1D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRSL1D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RSL1D1
dbVarRSL1D1
ClinVarRSL1D1
1000_GenomesRSL1D1 
Exome Variant ServerRSL1D1
ExAC (Exome Aggregation Consortium)RSL1D1 (select the gene name)
Genetic variants : HAPMAP26156
Genomic Variants (DGV)RSL1D1 [DGVbeta]
DECIPHERRSL1D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRSL1D1 
Mutations
ICGC Data PortalRSL1D1 
TCGA Data PortalRSL1D1 
Broad Tumor PortalRSL1D1
OASIS PortalRSL1D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRSL1D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRSL1D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RSL1D1
DgiDB (Drug Gene Interaction Database)RSL1D1
DoCM (Curated mutations)RSL1D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RSL1D1 (select a term)
intoGenRSL1D1
Cancer3DRSL1D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615874   
Orphanet
MedgenRSL1D1
Genetic Testing Registry RSL1D1
NextProtO76021 [Medical]
TSGene26156
GENETestsRSL1D1
Target ValidationRSL1D1
Huge Navigator RSL1D1 [HugePedia]
snp3D : Map Gene to Disease26156
BioCentury BCIQRSL1D1
ClinGenRSL1D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26156
Chemical/Pharm GKB GenePA142670966
Clinical trialRSL1D1
Miscellaneous
canSAR (ICR)RSL1D1 (select the gene name)
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRSL1D1
EVEXRSL1D1
GoPubMedRSL1D1
iHOPRSL1D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:29:39 CEST 2017

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