Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RSL24D1 (ribosomal L24 domain containing 1)

Identity

Alias_namesC15orf15
chromosome 15 open reading frame 15
Alias_symbol (synonym)HRP-L30-iso
L30
RPL24L
RPL24
Other aliasRLP24
TVAS3
HGNC (Hugo) RSL24D1
LocusID (NCBI) 51187
Atlas_Id 72905
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 55473512 and ends at 55489231 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RSL24D1 (15q21.3) / RAB27A (15q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RSL24D1   18479
Cards
Entrez_Gene (NCBI)RSL24D1  51187  ribosomal L24 domain containing 1
AliasesC15orf15; HRP-L30-iso; L30; RLP24; 
RPL24; RPL24L; TVAS3
GeneCards (Weizmann)RSL24D1
Ensembl hg19 (Hinxton) [Gene_View]  chr15:55473512-55489231 [Contig_View]  RSL24D1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:55473512-55489231 [Contig_View]  RSL24D1 [Vega]
TCGA cBioPortalRSL24D1
AceView (NCBI)RSL24D1
Genatlas (Paris)RSL24D1
WikiGenes51187
SOURCE (Princeton)RSL24D1
Genetics Home Reference (NIH)RSL24D1
Genomic and cartography
GoldenPath hg19 (UCSC)RSL24D1  -     chr15:55473512-55489231 -  15q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RSL24D1  -     15q21.3   [Description]    (hg38-Dec_2013)
EnsemblRSL24D1 - 15q21.3 [CytoView hg19]  RSL24D1 - 15q21.3 [CytoView hg38]
Mapping of homologs : NCBIRSL24D1 [Mapview hg19]  RSL24D1 [Mapview hg38]
OMIM613262   
Gene and transcription
Genbank (Entrez)AB462502 AF060926 AF165521 AF201949 AF212226
RefSeq transcript (Entrez)NM_016304
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)RSL24D1
Cluster EST : UnigeneHs.274772 [ NCBI ]
CGAP (NCI)Hs.274772
Gene ExpressionRSL24D1 [ NCBI-GEO ]   RSL24D1 [ EBI - ARRAY_EXPRESS ]   RSL24D1 [ SEEK ]   RSL24D1 [ MEM ]
Gene Expression Viewer (FireBrowse)RSL24D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51187
GTEX Portal (Tissue expression)RSL24D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHA3
Splice isoforms : SwissVarQ9UHA3
PhosPhoSitePlusQ9UHA3
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L24E (PS01073)   
Domains : Interpro (EBI)Ribosomal_L24e    Ribosomal_L24e_CS    Ribosomal_L24e_dom    Ribosomal_L24e_rel    Ribosome_biogen_RLP24    TRASH_dom   
Domain families : Pfam (Sanger)Ribosomal_L24e (PF01246)   
Domain families : Pfam (NCBI)pfam01246   
Domain families : Smart (EMBL)TRASH (SM00746)  
Conserved Domain (NCBI)RSL24D1
DMDM Disease mutations51187
Blocks (Seattle)RSL24D1
SuperfamilyQ9UHA3
Peptide AtlasQ9UHA3
HPRD12665
IPIIPI00008437   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHA3
IntAct (EBI)Q9UHA3
BioGRIDRSL24D1
STRING (EMBL)RSL24D1
ZODIACRSL24D1
Ontologies - Pathways
QuickGOQ9UHA3
Ontology : AmiGOstructural constituent of ribosome  protein binding  nucleus  nucleolus  ribosome  translation  ribosome biogenesis  
Ontology : EGO-EBIstructural constituent of ribosome  protein binding  nucleus  nucleolus  ribosome  translation  ribosome biogenesis  
Pathways : KEGGRibosome   
NDEx NetworkRSL24D1
Atlas of Cancer Signalling NetworkRSL24D1
Wikipedia pathwaysRSL24D1
Orthology - Evolution
OrthoDB51187
Phylogenetic Trees/Animal Genes : TreeFamRSL24D1
HOVERGENQ9UHA3
HOGENOMQ9UHA3
Homologs : HomoloGeneRSL24D1
Homology/Alignments : Family Browser (UCSC)RSL24D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRSL24D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RSL24D1
dbVarRSL24D1
ClinVarRSL24D1
1000_GenomesRSL24D1 
Exome Variant ServerRSL24D1
ExAC (Exome Aggregation Consortium)RSL24D1 (select the gene name)
Genetic variants : HAPMAP51187
Genomic Variants (DGV)RSL24D1 [DGVbeta]
DECIPHER (Syndromes)15:55473512-55489231  
CONAN: Copy Number AnalysisRSL24D1 
Mutations
ICGC Data PortalRSL24D1 
TCGA Data PortalRSL24D1 
Broad Tumor PortalRSL24D1
OASIS PortalRSL24D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRSL24D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRSL24D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RSL24D1
DgiDB (Drug Gene Interaction Database)RSL24D1
DoCM (Curated mutations)RSL24D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RSL24D1 (select a term)
intoGenRSL24D1
Cancer3DRSL24D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613262   
Orphanet
MedgenRSL24D1
Genetic Testing Registry RSL24D1
NextProtQ9UHA3 [Medical]
TSGene51187
GENETestsRSL24D1
Huge Navigator RSL24D1 [HugePedia]
snp3D : Map Gene to Disease51187
BioCentury BCIQRSL24D1
ClinGenRSL24D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51187
Chemical/Pharm GKB GenePA164725551
Clinical trialRSL24D1
Miscellaneous
canSAR (ICR)RSL24D1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRSL24D1
EVEXRSL24D1
GoPubMedRSL24D1
iHOPRSL24D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:03 CET 2017

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