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RSPH3 (radial spoke 3 homolog)

Identity

Alias_namesRSHL2
radial spokehead-like 2
radial spoke 3 homolog (Chlamydomonas)
Alias_symbol (synonym)dJ111C20.1
RSP3
Other aliasCILD32
HGNC (Hugo) RSPH3
LocusID (NCBI) 83861
Atlas_Id 72910
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 158972871 and ends at 159000187 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RSPH3   21054
Cards
Entrez_Gene (NCBI)RSPH3  83861  radial spoke 3 homolog
AliasesCILD32; RSHL2; RSP3; dJ111C20.1
GeneCards (Weizmann)RSPH3
Ensembl hg19 (Hinxton)ENSG00000130363 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130363 [Gene_View]  ENSG00000130363 [Sequence]  chr6:158972871-159000187 [Contig_View]  RSPH3 [Vega]
ICGC DataPortalENSG00000130363
TCGA cBioPortalRSPH3
AceView (NCBI)RSPH3
Genatlas (Paris)RSPH3
WikiGenes83861
SOURCE (Princeton)RSPH3
Genetics Home Reference (NIH)RSPH3
Genomic and cartography
GoldenPath hg38 (UCSC)RSPH3  -     chr6:158972871-159000187 -  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RSPH3  -     6q25.3   [Description]    (hg19-Feb_2009)
EnsemblRSPH3 - 6q25.3 [CytoView hg19]  RSPH3 - 6q25.3 [CytoView hg38]
Mapping of homologs : NCBIRSPH3 [Mapview hg19]  RSPH3 [Mapview hg38]
OMIM615876   616481   
Gene and transcription
Genbank (Entrez)AF353618 AI028007 AK057655 AK057931 BC011590
RefSeq transcript (Entrez)NM_001346418 NM_031924
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RSPH3
Cluster EST : UnigeneHs.391527 [ NCBI ]
CGAP (NCI)Hs.391527
Alternative Splicing GalleryENSG00000130363
Gene ExpressionRSPH3 [ NCBI-GEO ]   RSPH3 [ EBI - ARRAY_EXPRESS ]   RSPH3 [ SEEK ]   RSPH3 [ MEM ]
Gene Expression Viewer (FireBrowse)RSPH3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83861
GTEX Portal (Tissue expression)RSPH3
Human Protein AtlasENSG00000130363-RSPH3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UC2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UC2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UC2
Splice isoforms : SwissVarQ86UC2
PhosPhoSitePlusQ86UC2
Domains : Interpro (EBI)Radial_spoke_3   
Domain families : Pfam (Sanger)Radial_spoke_3 (PF06098)   
Domain families : Pfam (NCBI)pfam06098   
Conserved Domain (NCBI)RSPH3
DMDM Disease mutations83861
Blocks (Seattle)RSPH3
SuperfamilyQ86UC2
Human Protein Atlas [tissue]ENSG00000130363-RSPH3 [tissue]
Peptide AtlasQ86UC2
HPRD15279
IPIIPI00790586   IPI00065380   
Protein Interaction databases
DIP (DOE-UCLA)Q86UC2
IntAct (EBI)Q86UC2
FunCoupENSG00000130363
BioGRIDRSPH3
STRING (EMBL)RSPH3
ZODIACRSPH3
Ontologies - Pathways
QuickGOQ86UC2
Ontology : AmiGOprotein binding  cytoplasm  cytoskeleton  cell projection  
Ontology : EGO-EBIprotein binding  cytoplasm  cytoskeleton  cell projection  
NDEx NetworkRSPH3
Atlas of Cancer Signalling NetworkRSPH3
Wikipedia pathwaysRSPH3
Orthology - Evolution
OrthoDB83861
GeneTree (enSembl)ENSG00000130363
Phylogenetic Trees/Animal Genes : TreeFamRSPH3
HOVERGENQ86UC2
HOGENOMQ86UC2
Homologs : HomoloGeneRSPH3
Homology/Alignments : Family Browser (UCSC)RSPH3
Gene fusions - Rearrangements
Fusion : QuiverRSPH3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRSPH3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RSPH3
dbVarRSPH3
ClinVarRSPH3
1000_GenomesRSPH3 
Exome Variant ServerRSPH3
ExAC (Exome Aggregation Consortium)ENSG00000130363
GNOMAD BrowserENSG00000130363
Varsome BrowserRSPH3
Genetic variants : HAPMAP83861
Genomic Variants (DGV)RSPH3 [DGVbeta]
DECIPHERRSPH3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRSPH3 
Mutations
ICGC Data PortalRSPH3 
TCGA Data PortalRSPH3 
Broad Tumor PortalRSPH3
OASIS PortalRSPH3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRSPH3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRSPH3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RSPH3
DgiDB (Drug Gene Interaction Database)RSPH3
DoCM (Curated mutations)RSPH3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RSPH3 (select a term)
intoGenRSPH3
Cancer3DRSPH3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615876    616481   
Orphanet665   
DisGeNETRSPH3
MedgenRSPH3
Genetic Testing Registry RSPH3
NextProtQ86UC2 [Medical]
TSGene83861
GENETestsRSPH3
Target ValidationRSPH3
Huge Navigator RSPH3 [HugePedia]
snp3D : Map Gene to Disease83861
BioCentury BCIQRSPH3
ClinGenRSPH3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83861
Chemical/Pharm GKB GenePA162402248
Clinical trialRSPH3
Miscellaneous
canSAR (ICR)RSPH3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRSPH3
EVEXRSPH3
GoPubMedRSPH3
iHOPRSPH3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:27:48 CEST 2018

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