Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RSPH4A (radial spoke head 4 homolog A)

Identity

Alias_namesRSHL3
radial spokehead-like 3
radial spoke head 4 homolog A (Chlamydomonas)
Alias_symbol (synonym)dJ412I7.1
FLJ37974
RSPH6B
CILD11
Other alias
HGNC (Hugo) RSPH4A
LocusID (NCBI) 345895
Atlas_Id 72911
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 116616479 and ends at 116632985 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RSPH4A   21558
Cards
Entrez_Gene (NCBI)RSPH4A  345895  radial spoke head 4 homolog A
AliasesCILD11; RSHL3; RSPH6B; dJ412I7.1
GeneCards (Weizmann)RSPH4A
Ensembl hg19 (Hinxton)ENSG00000111834 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111834 [Gene_View]  ENSG00000111834 [Sequence]  chr6:116616479-116632985 [Contig_View]  RSPH4A [Vega]
ICGC DataPortalENSG00000111834
TCGA cBioPortalRSPH4A
AceView (NCBI)RSPH4A
Genatlas (Paris)RSPH4A
WikiGenes345895
SOURCE (Princeton)RSPH4A
Genetics Home Reference (NIH)RSPH4A
Genomic and cartography
GoldenPath hg38 (UCSC)RSPH4A  -     chr6:116616479-116632985 +  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RSPH4A  -     6q22.1   [Description]    (hg19-Feb_2009)
EnsemblRSPH4A - 6q22.1 [CytoView hg19]  RSPH4A - 6q22.1 [CytoView hg38]
Mapping of homologs : NCBIRSPH4A [Mapview hg19]  RSPH4A [Mapview hg38]
OMIM612647   612649   
Gene and transcription
Genbank (Entrez)AK095293 AK299754 BC022879 BC106949 CB851663
RefSeq transcript (Entrez)NM_001010892 NM_001161664
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RSPH4A
Cluster EST : UnigeneHs.625134 [ NCBI ]
CGAP (NCI)Hs.625134
Alternative Splicing GalleryENSG00000111834
Gene ExpressionRSPH4A [ NCBI-GEO ]   RSPH4A [ EBI - ARRAY_EXPRESS ]   RSPH4A [ SEEK ]   RSPH4A [ MEM ]
Gene Expression Viewer (FireBrowse)RSPH4A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)345895
GTEX Portal (Tissue expression)RSPH4A
Human Protein AtlasENSG00000111834-RSPH4A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TD94   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TD94  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TD94
Splice isoforms : SwissVarQ5TD94
PhosPhoSitePlusQ5TD94
Domains : Interpro (EBI)Radial_spoke   
Domain families : Pfam (Sanger)Radial_spoke (PF04712)   
Domain families : Pfam (NCBI)pfam04712   
Conserved Domain (NCBI)RSPH4A
DMDM Disease mutations345895
Blocks (Seattle)RSPH4A
SuperfamilyQ5TD94
Human Protein Atlas [tissue]ENSG00000111834-RSPH4A [tissue]
Peptide AtlasQ5TD94
HPRD18005
IPIIPI00455732   IPI00513793   IPI00843919   IPI00939802   
Protein Interaction databases
DIP (DOE-UCLA)Q5TD94
IntAct (EBI)Q5TD94
FunCoupENSG00000111834
BioGRIDRSPH4A
STRING (EMBL)RSPH4A
ZODIACRSPH4A
Ontologies - Pathways
QuickGOQ5TD94
Ontology : AmiGOradial spoke  cilium movement  molecular_function  cytoplasm  axoneme  axoneme  motile cilium  axoneme assembly  
Ontology : EGO-EBIradial spoke  cilium movement  molecular_function  cytoplasm  axoneme  axoneme  motile cilium  axoneme assembly  
NDEx NetworkRSPH4A
Atlas of Cancer Signalling NetworkRSPH4A
Wikipedia pathwaysRSPH4A
Orthology - Evolution
OrthoDB345895
GeneTree (enSembl)ENSG00000111834
Phylogenetic Trees/Animal Genes : TreeFamRSPH4A
HOVERGENQ5TD94
HOGENOMQ5TD94
Homologs : HomoloGeneRSPH4A
Homology/Alignments : Family Browser (UCSC)RSPH4A
Gene fusions - Rearrangements
Fusion : QuiverRSPH4A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRSPH4A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RSPH4A
dbVarRSPH4A
ClinVarRSPH4A
1000_GenomesRSPH4A 
Exome Variant ServerRSPH4A
ExAC (Exome Aggregation Consortium)ENSG00000111834
GNOMAD BrowserENSG00000111834
Varsome BrowserRSPH4A
Genetic variants : HAPMAP345895
Genomic Variants (DGV)RSPH4A [DGVbeta]
DECIPHERRSPH4A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRSPH4A 
Mutations
ICGC Data PortalRSPH4A 
TCGA Data PortalRSPH4A 
Broad Tumor PortalRSPH4A
OASIS PortalRSPH4A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRSPH4A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRSPH4A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch RSPH4A
DgiDB (Drug Gene Interaction Database)RSPH4A
DoCM (Curated mutations)RSPH4A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RSPH4A (select a term)
intoGenRSPH4A
Cancer3DRSPH4A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612647    612649   
Orphanet665   
DisGeNETRSPH4A
MedgenRSPH4A
Genetic Testing Registry RSPH4A
NextProtQ5TD94 [Medical]
TSGene345895
GENETestsRSPH4A
Target ValidationRSPH4A
Huge Navigator RSPH4A [HugePedia]
snp3D : Map Gene to Disease345895
BioCentury BCIQRSPH4A
ClinGenRSPH4A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD345895
Chemical/Pharm GKB GenePA164725568
Clinical trialRSPH4A
Miscellaneous
canSAR (ICR)RSPH4A (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRSPH4A
EVEXRSPH4A
GoPubMedRSPH4A
iHOPRSPH4A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:27:48 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.