Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RSPH9 (radial spoke head component 9)

Identity

Alias (NCBI)C6orf206
CILD12
MRPS18AL1
HGNC (Hugo) RSPH9
HGNC Alias symbFLJ30845
CILD12
HGNC Previous nameMRPS18AL1
 C6orf206
HGNC Previous namemitochondrial ribosomal protein S18A-like 1
 chromosome 6 open reading frame 206
 radial spoke head 9 homolog (Chlamydomonas)
LocusID (NCBI) 221421
Atlas_Id 72913
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 43645030 and ends at 43671011 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
UTRN (6q24.2) / RSPH9 (6p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)RSPH9   21057
Cards
Entrez_Gene (NCBI)RSPH9    radial spoke head component 9
AliasesC6orf206; CILD12; MRPS18AL1
GeneCards (Weizmann)RSPH9
Ensembl hg19 (Hinxton)ENSG00000172426 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172426 [Gene_View]  ENSG00000172426 [Sequence]  chr6:43645030-43671011 [Contig_View]  RSPH9 [Vega]
ICGC DataPortalENSG00000172426
TCGA cBioPortalRSPH9
AceView (NCBI)RSPH9
Genatlas (Paris)RSPH9
SOURCE (Princeton)RSPH9
Genetics Home Reference (NIH)RSPH9
Genomic and cartography
GoldenPath hg38 (UCSC)RSPH9  -     chr6:43645030-43671011 +  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RSPH9  -     6p21.1   [Description]    (hg19-Feb_2009)
GoldenPathRSPH9 - 6p21.1 [CytoView hg19]  RSPH9 - 6p21.1 [CytoView hg38]
ImmunoBaseENSG00000172426
genome Data Viewer NCBIRSPH9 [Mapview hg19]  
OMIM612648   612650   
Gene and transcription
Genbank (Entrez)AK055407 AK291399 BC029519 DA486918
RefSeq transcript (Entrez)NM_001193341 NM_152732
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RSPH9
Alternative Splicing GalleryENSG00000172426
Gene ExpressionRSPH9 [ NCBI-GEO ]   RSPH9 [ EBI - ARRAY_EXPRESS ]   RSPH9 [ SEEK ]   RSPH9 [ MEM ]
Gene Expression Viewer (FireBrowse)RSPH9 [ Firebrowse - Broad ]
GenevisibleExpression of RSPH9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221421
GTEX Portal (Tissue expression)RSPH9
Human Protein AtlasENSG00000172426-RSPH9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1X1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1X1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1X1
Splice isoforms : SwissVarQ9H1X1
PhosPhoSitePlusQ9H1X1
Domains : Interpro (EBI)Radial_spoke   
Domain families : Pfam (Sanger)Radial_spoke (PF04712)   
Domain families : Pfam (NCBI)pfam04712   
Conserved Domain (NCBI)RSPH9
Blocks (Seattle)RSPH9
SuperfamilyQ9H1X1
Human Protein Atlas [tissue]ENSG00000172426-RSPH9 [tissue]
Peptide AtlasQ9H1X1
HPRD12875
IPIIPI00005268   IPI00514735   IPI00005262   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1X1
IntAct (EBI)Q9H1X1
BioGRIDRSPH9
STRING (EMBL)RSPH9
ZODIACRSPH9
Ontologies - Pathways
QuickGOQ9H1X1
Ontology : AmiGOradial spoke  cilium movement  protein binding  axoneme  axoneme  axoneme  motile cilium  axoneme assembly  axoneme assembly  motile cilium assembly  cilium movement involved in cell motility  9+2 motile cilium  
Ontology : EGO-EBIradial spoke  cilium movement  protein binding  axoneme  axoneme  axoneme  motile cilium  axoneme assembly  axoneme assembly  motile cilium assembly  cilium movement involved in cell motility  9+2 motile cilium  
NDEx NetworkRSPH9
Atlas of Cancer Signalling NetworkRSPH9
Wikipedia pathwaysRSPH9
Orthology - Evolution
OrthoDB221421
GeneTree (enSembl)ENSG00000172426
Phylogenetic Trees/Animal Genes : TreeFamRSPH9
HOGENOMQ9H1X1
Homologs : HomoloGeneRSPH9
Homology/Alignments : Family Browser (UCSC)RSPH9
Gene fusions - Rearrangements
Fusion : QuiverRSPH9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRSPH9 [hg38]
dbVarRSPH9
ClinVarRSPH9
MonarchRSPH9
1000_GenomesRSPH9 
Exome Variant ServerRSPH9
GNOMAD BrowserENSG00000172426
Varsome BrowserRSPH9
Genomic Variants (DGV)RSPH9 [DGVbeta]
DECIPHERRSPH9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRSPH9 
Mutations
ICGC Data PortalRSPH9 
TCGA Data PortalRSPH9 
Broad Tumor PortalRSPH9
OASIS PortalRSPH9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRSPH9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRSPH9
Mutations and Diseases : HGMDRSPH9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RSPH9
DgiDB (Drug Gene Interaction Database)RSPH9
DoCM (Curated mutations)RSPH9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RSPH9 (select a term)
intoGenRSPH9
Cancer3DRSPH9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612648    612650   
Orphanet665   
DisGeNETRSPH9
MedgenRSPH9
Genetic Testing Registry RSPH9
NextProtQ9H1X1 [Medical]
GENETestsRSPH9
Target ValidationRSPH9
Huge Navigator RSPH9 [HugePedia]
ClinGenRSPH9
Clinical trials, drugs, therapy
MyCancerGenomeRSPH9
Protein Interactions : CTD
Pharm GKB GenePA164725569
Clinical trialRSPH9
Miscellaneous
canSAR (ICR)RSPH9 (select the gene name)
HarmonizomeRSPH9
DataMed IndexRSPH9
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRSPH9
EVEXRSPH9
GoPubMedRSPH9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:25:48 CET 2020

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