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RSPO4 (R-spondin 4)

Identity

Alias_namesC20orf182
chromosome 20 open reading frame 182
R-spondin family, member 4
Alias_symbol (synonym)dJ824F16.3
Other aliasCRISTIN4
HGNC (Hugo) RSPO4
LocusID (NCBI) 343637
Atlas_Id 72914
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 958453 and ends at 1002264 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RSPO4   16175
Cards
Entrez_Gene (NCBI)RSPO4  343637  R-spondin 4
AliasesC20orf182; CRISTIN4
GeneCards (Weizmann)RSPO4
Ensembl hg19 (Hinxton)ENSG00000101282 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101282 [Gene_View]  chr20:958453-1002264 [Contig_View]  RSPO4 [Vega]
ICGC DataPortalENSG00000101282
TCGA cBioPortalRSPO4
AceView (NCBI)RSPO4
Genatlas (Paris)RSPO4
WikiGenes343637
SOURCE (Princeton)RSPO4
Genetics Home Reference (NIH)RSPO4
Genomic and cartography
GoldenPath hg38 (UCSC)RSPO4  -     chr20:958453-1002264 -  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RSPO4  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblRSPO4 - 20p13 [CytoView hg19]  RSPO4 - 20p13 [CytoView hg38]
Mapping of homologs : NCBIRSPO4 [Mapview hg19]  RSPO4 [Mapview hg38]
OMIM206800   610573   
Gene and transcription
Genbank (Entrez)AK122609 BC156852 BQ185331 DQ355152
RefSeq transcript (Entrez)NM_001029871 NM_001040007
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RSPO4
Cluster EST : UnigeneHs.444980 [ NCBI ]
CGAP (NCI)Hs.444980
Alternative Splicing GalleryENSG00000101282
Gene ExpressionRSPO4 [ NCBI-GEO ]   RSPO4 [ EBI - ARRAY_EXPRESS ]   RSPO4 [ SEEK ]   RSPO4 [ MEM ]
Gene Expression Viewer (FireBrowse)RSPO4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)343637
GTEX Portal (Tissue expression)RSPO4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2I0M5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2I0M5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2I0M5
Splice isoforms : SwissVarQ2I0M5
PhosPhoSitePlusQ2I0M5
Domaine pattern : Prosite (Expaxy)TSP1 (PS50092)   
Domains : Interpro (EBI)Furin_repeat    Growth_fac_rcpt_    TSP1_rpt   
Domain families : Pfam (Sanger)Furin-like_2 (PF15913)   
Domain families : Pfam (NCBI)pfam15913   
Domain families : Smart (EMBL)FU (SM00261)  TSP1 (SM00209)  
Conserved Domain (NCBI)RSPO4
DMDM Disease mutations343637
Blocks (Seattle)RSPO4
SuperfamilyQ2I0M5
Human Protein AtlasENSG00000101282
Peptide AtlasQ2I0M5
IPIIPI00242075   IPI00740738   
Protein Interaction databases
DIP (DOE-UCLA)Q2I0M5
IntAct (EBI)Q2I0M5
FunCoupENSG00000101282
BioGRIDRSPO4
STRING (EMBL)RSPO4
ZODIACRSPO4
Ontologies - Pathways
QuickGOQ2I0M5
Ontology : AmiGOextracellular region  extracellular region  heparin binding  Wnt signaling pathway  positive regulation of Wnt signaling pathway  nail development  
Ontology : EGO-EBIextracellular region  extracellular region  heparin binding  Wnt signaling pathway  positive regulation of Wnt signaling pathway  nail development  
NDEx NetworkRSPO4
Atlas of Cancer Signalling NetworkRSPO4
Wikipedia pathwaysRSPO4
Orthology - Evolution
OrthoDB343637
GeneTree (enSembl)ENSG00000101282
Phylogenetic Trees/Animal Genes : TreeFamRSPO4
HOVERGENQ2I0M5
HOGENOMQ2I0M5
Homologs : HomoloGeneRSPO4
Homology/Alignments : Family Browser (UCSC)RSPO4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRSPO4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RSPO4
dbVarRSPO4
ClinVarRSPO4
1000_GenomesRSPO4 
Exome Variant ServerRSPO4
ExAC (Exome Aggregation Consortium)RSPO4 (select the gene name)
Genetic variants : HAPMAP343637
Genomic Variants (DGV)RSPO4 [DGVbeta]
DECIPHERRSPO4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRSPO4 
Mutations
ICGC Data PortalRSPO4 
TCGA Data PortalRSPO4 
Broad Tumor PortalRSPO4
OASIS PortalRSPO4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRSPO4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRSPO4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RSPO4
DgiDB (Drug Gene Interaction Database)RSPO4
DoCM (Curated mutations)RSPO4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RSPO4 (select a term)
intoGenRSPO4
Cancer3DRSPO4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM206800    610573   
Orphanet12570   
MedgenRSPO4
Genetic Testing Registry RSPO4
NextProtQ2I0M5 [Medical]
TSGene343637
GENETestsRSPO4
Target ValidationRSPO4
Huge Navigator RSPO4 [HugePedia]
snp3D : Map Gene to Disease343637
BioCentury BCIQRSPO4
ClinGenRSPO4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD343637
Chemical/Pharm GKB GenePA25726
Clinical trialRSPO4
Miscellaneous
canSAR (ICR)RSPO4 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRSPO4
EVEXRSPO4
GoPubMedRSPO4
iHOPRSPO4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:38 CEST 2017

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