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RSRC1 (arginine and serine rich coiled-coil 1)

Identity

Alias_namesarginine/serine-rich coiled-coil 1
Alias_symbol (synonym)MGC12197
BM-011
SRrp53
SFRS21
Other alias
HGNC (Hugo) RSRC1
LocusID (NCBI) 51319
Atlas_Id 72916
Location 3q25.32  [Link to chromosome band 3q25]
Location_base_pair Starts at 158110052 and ends at 158544835 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HACD2 (3q21.1) / RSRC1 (3q25.32)MFSD1 (3q25.32) / RSRC1 (3q25.32)NUP210 (3p25.1) / RSRC1 (3q25.32)
RSRC1 (3q25.32) / ATP1A1 (1p13.1)RSRC1 (3q25.32) / NLGN1 (3q26.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RSRC1   24152
Cards
Entrez_Gene (NCBI)RSRC1  51319  arginine and serine rich coiled-coil 1
AliasesBM-011; SFRS21; SRrp53
GeneCards (Weizmann)RSRC1
Ensembl hg19 (Hinxton)ENSG00000174891 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174891 [Gene_View]  chr3:158110052-158544835 [Contig_View]  RSRC1 [Vega]
ICGC DataPortalENSG00000174891
TCGA cBioPortalRSRC1
AceView (NCBI)RSRC1
Genatlas (Paris)RSRC1
WikiGenes51319
SOURCE (Princeton)RSRC1
Genetics Home Reference (NIH)RSRC1
Genomic and cartography
GoldenPath hg38 (UCSC)RSRC1  -     chr3:158110052-158544835 +  3q25.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RSRC1  -     3q25.32   [Description]    (hg19-Feb_2009)
EnsemblRSRC1 - 3q25.32 [CytoView hg19]  RSRC1 - 3q25.32 [CytoView hg38]
Mapping of homologs : NCBIRSRC1 [Mapview hg19]  RSRC1 [Mapview hg38]
OMIM613352   
Gene and transcription
Genbank (Entrez)AF208853 AK290334 AK300388 BC006982 BC010357
RefSeq transcript (Entrez)NM_001271834 NM_001271838 NM_016625
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RSRC1
Cluster EST : UnigeneHs.591283 [ NCBI ]
CGAP (NCI)Hs.591283
Alternative Splicing GalleryENSG00000174891
Gene ExpressionRSRC1 [ NCBI-GEO ]   RSRC1 [ EBI - ARRAY_EXPRESS ]   RSRC1 [ SEEK ]   RSRC1 [ MEM ]
Gene Expression Viewer (FireBrowse)RSRC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51319
GTEX Portal (Tissue expression)RSRC1
Human Protein AtlasENSG00000174891-RSRC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IZ7
Splice isoforms : SwissVarQ96IZ7
PhosPhoSitePlusQ96IZ7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RSRC1
DMDM Disease mutations51319
Blocks (Seattle)RSRC1
SuperfamilyQ96IZ7
Human Protein Atlas [tissue]ENSG00000174891-RSRC1 [tissue]
Peptide AtlasQ96IZ7
HPRD18006
IPIIPI00395014   IPI00044960   IPI00946678   IPI00946324   IPI00947491   IPI00945785   IPI00945603   IPI00945093   IPI00946785   
Protein Interaction databases
DIP (DOE-UCLA)Q96IZ7
IntAct (EBI)Q96IZ7
FunCoupENSG00000174891
BioGRIDRSRC1
STRING (EMBL)RSRC1
ZODIACRSRC1
Ontologies - Pathways
QuickGOQ96IZ7
Ontology : AmiGOalternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  protein binding  nucleus  cytoplasm  protein phosphorylation  nucleocytoplasmic transport  RNA splicing  nuclear speck  response to antibiotic  
Ontology : EGO-EBIalternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  protein binding  nucleus  cytoplasm  protein phosphorylation  nucleocytoplasmic transport  RNA splicing  nuclear speck  response to antibiotic  
NDEx NetworkRSRC1
Atlas of Cancer Signalling NetworkRSRC1
Wikipedia pathwaysRSRC1
Orthology - Evolution
OrthoDB51319
GeneTree (enSembl)ENSG00000174891
Phylogenetic Trees/Animal Genes : TreeFamRSRC1
HOVERGENQ96IZ7
HOGENOMQ96IZ7
Homologs : HomoloGeneRSRC1
Homology/Alignments : Family Browser (UCSC)RSRC1
Gene fusions - Rearrangements
Fusion: Tumor Portal RSRC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRSRC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RSRC1
dbVarRSRC1
ClinVarRSRC1
1000_GenomesRSRC1 
Exome Variant ServerRSRC1
ExAC (Exome Aggregation Consortium)ENSG00000174891
GNOMAD BrowserENSG00000174891
Genetic variants : HAPMAP51319
Genomic Variants (DGV)RSRC1 [DGVbeta]
DECIPHERRSRC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRSRC1 
Mutations
ICGC Data PortalRSRC1 
TCGA Data PortalRSRC1 
Broad Tumor PortalRSRC1
OASIS PortalRSRC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRSRC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRSRC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RSRC1
DgiDB (Drug Gene Interaction Database)RSRC1
DoCM (Curated mutations)RSRC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RSRC1 (select a term)
intoGenRSRC1
Cancer3DRSRC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613352   
Orphanet
MedgenRSRC1
Genetic Testing Registry RSRC1
NextProtQ96IZ7 [Medical]
TSGene51319
GENETestsRSRC1
Target ValidationRSRC1
Huge Navigator RSRC1 [HugePedia]
snp3D : Map Gene to Disease51319
BioCentury BCIQRSRC1
ClinGenRSRC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51319
Chemical/Pharm GKB GenePA142670969
Clinical trialRSRC1
Miscellaneous
canSAR (ICR)RSRC1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRSRC1
EVEXRSRC1
GoPubMedRSRC1
iHOPRSRC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:26:04 CET 2017

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