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RTBDN (retbindin)

Identity

Alias (NCBI)-
HGNC (Hugo) RTBDN
HGNC Alias symbFLJ36353
LocusID (NCBI) 83546
Atlas_Id 72919
Location 19p13.13  [Link to chromosome band 19p13]
Location_base_pair Starts at 12825477 and ends at 12835428 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HOOK2 (19p13.2) / RTBDN (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  HOOK2/RTBDN (19p13)

External links

Nomenclature
HGNC (Hugo)RTBDN   30310
Cards
Entrez_Gene (NCBI)RTBDN    retbindin
Aliases
GeneCards (Weizmann)RTBDN
Ensembl hg19 (Hinxton)ENSG00000132026 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132026 [Gene_View]  ENSG00000132026 [Sequence]  chr19:12825477-12835428 [Contig_View]  RTBDN [Vega]
ICGC DataPortalENSG00000132026
TCGA cBioPortalRTBDN
AceView (NCBI)RTBDN
Genatlas (Paris)RTBDN
SOURCE (Princeton)RTBDN
Genetics Home Reference (NIH)RTBDN
Genomic and cartography
GoldenPath hg38 (UCSC)RTBDN  -     chr19:12825477-12835428 -  19p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTBDN  -     19p13.13   [Description]    (hg19-Feb_2009)
GoldenPathRTBDN - 19p13.13 [CytoView hg19]  RTBDN - 19p13.13 [CytoView hg38]
ImmunoBaseENSG00000132026
genome Data Viewer NCBIRTBDN [Mapview hg19]  
OMIM609553   
Gene and transcription
Genbank (Entrez)AB593122 AK093672 AY028917 BC005063 BG471112
RefSeq transcript (Entrez)NM_001080997 NM_001270440 NM_001270441 NM_001270442 NM_001270443 NM_001270444 NM_001270445 NM_031429
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RTBDN
Alternative Splicing GalleryENSG00000132026
Gene ExpressionRTBDN [ NCBI-GEO ]   RTBDN [ EBI - ARRAY_EXPRESS ]   RTBDN [ SEEK ]   RTBDN [ MEM ]
Gene Expression Viewer (FireBrowse)RTBDN [ Firebrowse - Broad ]
GenevisibleExpression of RTBDN in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83546
GTEX Portal (Tissue expression)RTBDN
Human Protein AtlasENSG00000132026-RTBDN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSG5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSG5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSG5
Splice isoforms : SwissVarQ9BSG5
PhosPhoSitePlusQ9BSG5
Domains : Interpro (EBI)Folate_rcpt    Folate_rcpt-like   
Domain families : Pfam (Sanger)Folate_rec (PF03024)   
Domain families : Pfam (NCBI)pfam03024   
Conserved Domain (NCBI)RTBDN
Blocks (Seattle)RTBDN
SuperfamilyQ9BSG5
Human Protein Atlas [tissue]ENSG00000132026-RTBDN [tissue]
Peptide AtlasQ9BSG5
HPRD18007
IPIIPI00829898   IPI00027765   IPI01011455   IPI00166230   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSG5
IntAct (EBI)Q9BSG5
BioGRIDRTBDN
STRING (EMBL)RTBDN
ZODIACRTBDN
Ontologies - Pathways
QuickGOQ9BSG5
Ontology : AmiGOanchored component of external side of plasma membrane  riboflavin transmembrane transporter activity  riboflavin transport  interphotoreceptor matrix  signaling receptor activity  riboflavin binding  
Ontology : EGO-EBIanchored component of external side of plasma membrane  riboflavin transmembrane transporter activity  riboflavin transport  interphotoreceptor matrix  signaling receptor activity  riboflavin binding  
NDEx NetworkRTBDN
Atlas of Cancer Signalling NetworkRTBDN
Wikipedia pathwaysRTBDN
Orthology - Evolution
OrthoDB83546
GeneTree (enSembl)ENSG00000132026
Phylogenetic Trees/Animal Genes : TreeFamRTBDN
HOGENOMQ9BSG5
Homologs : HomoloGeneRTBDN
Homology/Alignments : Family Browser (UCSC)RTBDN
Gene fusions - Rearrangements
Fusion : QuiverRTBDN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTBDN [hg38]
dbVarRTBDN
ClinVarRTBDN
MonarchRTBDN
1000_GenomesRTBDN 
Exome Variant ServerRTBDN
GNOMAD BrowserENSG00000132026
Varsome BrowserRTBDN
Genomic Variants (DGV)RTBDN [DGVbeta]
DECIPHERRTBDN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRTBDN 
Mutations
ICGC Data PortalRTBDN 
TCGA Data PortalRTBDN 
Broad Tumor PortalRTBDN
OASIS PortalRTBDN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRTBDN  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRTBDN
Mutations and Diseases : HGMDRTBDN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RTBDN
DgiDB (Drug Gene Interaction Database)RTBDN
DoCM (Curated mutations)RTBDN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTBDN (select a term)
intoGenRTBDN
Cancer3DRTBDN(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609553   
Orphanet
DisGeNETRTBDN
MedgenRTBDN
Genetic Testing Registry RTBDN
NextProtQ9BSG5 [Medical]
GENETestsRTBDN
Target ValidationRTBDN
Huge Navigator RTBDN [HugePedia]
ClinGenRTBDN
Clinical trials, drugs, therapy
MyCancerGenomeRTBDN
Protein Interactions : CTD
Pharm GKB GenePA144596387
Clinical trialRTBDN
Miscellaneous
canSAR (ICR)RTBDN (select the gene name)
HarmonizomeRTBDN
DataMed IndexRTBDN
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTBDN
EVEXRTBDN
GoPubMedRTBDN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:25:49 CET 2020
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