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RTCA (RNA 3'-terminal phosphate cyclase)

Identity

Alias_namesRTCD1
RTC domain containing 1
RNA terminal phosphate cyclase domain 1
Alias_symbol (synonym)RPC
RTC1
Other alias
HGNC (Hugo) RTCA
LocusID (NCBI) 8634
Atlas_Id 72920
Location 1p21.2  [Link to chromosome band 1p21]
Location_base_pair Starts at 100731714 and ends at 100758325 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RTCA (1p21.2) / LOC100506451 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RTCA   17981
Cards
Entrez_Gene (NCBI)RTCA  8634  RNA 3'-terminal phosphate cyclase
AliasesRPC; RTC1; RTCD1
GeneCards (Weizmann)RTCA
Ensembl hg19 (Hinxton)ENSG00000137996 [Gene_View]  chr1:100731714-100758325 [Contig_View]  RTCA [Vega]
Ensembl hg38 (Hinxton)ENSG00000137996 [Gene_View]  chr1:100731714-100758325 [Contig_View]  RTCA [Vega]
ICGC DataPortalENSG00000137996
TCGA cBioPortalRTCA
AceView (NCBI)RTCA
Genatlas (Paris)RTCA
WikiGenes8634
SOURCE (Princeton)RTCA
Genetics Home Reference (NIH)RTCA
Genomic and cartography
GoldenPath hg19 (UCSC)RTCA  -     chr1:100731714-100758325 +  1p21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RTCA  -     1p21.2   [Description]    (hg38-Dec_2013)
EnsemblRTCA - 1p21.2 [CytoView hg19]  RTCA - 1p21.2 [CytoView hg38]
Mapping of homologs : NCBIRTCA [Mapview hg19]  RTCA [Mapview hg38]
OMIM611286   
Gene and transcription
Genbank (Entrez)AI587400 AK292366 AK299793 AK307445 AK309394
RefSeq transcript (Entrez)NM_001130841 NM_003729
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)RTCA
Cluster EST : UnigeneHs.484222 [ NCBI ]
CGAP (NCI)Hs.484222
Alternative Splicing GalleryENSG00000137996
Gene ExpressionRTCA [ NCBI-GEO ]   RTCA [ EBI - ARRAY_EXPRESS ]   RTCA [ SEEK ]   RTCA [ MEM ]
Gene Expression Viewer (FireBrowse)RTCA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8634
GTEX Portal (Tissue expression)RTCA
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00442   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00442  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00442
Splice isoforms : SwissVarO00442
Catalytic activity : Enzyme6.5.1.4 [ Enzyme-Expasy ]   6.5.1.46.5.1.4 [ IntEnz-EBI ]   6.5.1.4 [ BRENDA ]   6.5.1.4 [ KEGG ]   
PhosPhoSitePlusO00442
Domaine pattern : Prosite (Expaxy)RTC (PS01287)   
Domains : Interpro (EBI)RNA3'-term_phos_cycl_insert    RNA3'_phos_cyclase_dom    RNA3'_term_phos_cyc    RNA3'_term_phos_cyc_type_1    RNA3'_term_phos_cycl-like_CS    RNA3'P_cycl/enolpyr_Trfase_a/b   
Domain families : Pfam (Sanger)RTC (PF01137)    RTC_insert (PF05189)   
Domain families : Pfam (NCBI)pfam01137    pfam05189   
Conserved Domain (NCBI)RTCA
DMDM Disease mutations8634
Blocks (Seattle)RTCA
SuperfamilyO00442
Human Protein AtlasENSG00000137996
Peptide AtlasO00442
HPRD15280
IPIIPI00011726   IPI00221327   IPI00647050   
Protein Interaction databases
DIP (DOE-UCLA)O00442
IntAct (EBI)O00442
FunCoupENSG00000137996
BioGRIDRTCA
STRING (EMBL)RTCA
ZODIACRTCA
Ontologies - Pathways
QuickGOO00442
Ontology : AmiGORNA binding  RNA-3'-phosphate cyclase activity  ATP binding  nucleus  nucleoplasm  RNA processing  poly(A) RNA binding  
Ontology : EGO-EBIRNA binding  RNA-3'-phosphate cyclase activity  ATP binding  nucleus  nucleoplasm  RNA processing  poly(A) RNA binding  
NDEx NetworkRTCA
Atlas of Cancer Signalling NetworkRTCA
Wikipedia pathwaysRTCA
Orthology - Evolution
OrthoDB8634
GeneTree (enSembl)ENSG00000137996
Phylogenetic Trees/Animal Genes : TreeFamRTCA
HOVERGENO00442
HOGENOMO00442
Homologs : HomoloGeneRTCA
Homology/Alignments : Family Browser (UCSC)RTCA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTCA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTCA
dbVarRTCA
ClinVarRTCA
1000_GenomesRTCA 
Exome Variant ServerRTCA
ExAC (Exome Aggregation Consortium)RTCA (select the gene name)
Genetic variants : HAPMAP8634
Genomic Variants (DGV)RTCA [DGVbeta]
DECIPHER (Syndromes)1:100731714-100758325  ENSG00000137996
CONAN: Copy Number AnalysisRTCA 
Mutations
ICGC Data PortalRTCA 
TCGA Data PortalRTCA 
Broad Tumor PortalRTCA
OASIS PortalRTCA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRTCA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRTCA
BioMutasearch RTCA
DgiDB (Drug Gene Interaction Database)RTCA
DoCM (Curated mutations)RTCA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTCA (select a term)
intoGenRTCA
Cancer3DRTCA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611286   
Orphanet
MedgenRTCA
Genetic Testing Registry RTCA
NextProtO00442 [Medical]
TSGene8634
GENETestsRTCA
Huge Navigator RTCA [HugePedia]
snp3D : Map Gene to Disease8634
BioCentury BCIQRTCA
ClinGenRTCA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8634
Chemical/Pharm GKB GenePA34877
Clinical trialRTCA
Miscellaneous
canSAR (ICR)RTCA (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTCA
EVEXRTCA
GoPubMedRTCA
iHOPRTCA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:06 CET 2017

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