Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RTEL1 (regulator of telomere elongation helicase 1)

Identity

Alias (NCBI)C20orf41
DKCA4
DKCB5
NHL
PFBMFT3
RTEL
HGNC (Hugo) RTEL1
HGNC Alias symbbK3184A7.3
NHL
DKFZP434C013
KIAA1088
RTEL
HGNC Previous nameC20orf41
HGNC Previous namechromosome 20 open reading frame 41
LocusID (NCBI) 51750
Atlas_Id 882
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 63658312 and ends at 63696245 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP2A3 (17p13.2) / RTEL1 (20q13.33)RTEL1 (20q13.33) / RPLP0 (12q24.23)RTEL1 (20q13.33) / RTEL1 (20q13.33)
ZGPAT (20q13.33) / RTEL1 (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 2 ]
  Dyskeratosis congenita (DKC) Familial glioma


External links

Nomenclature
HGNC (Hugo)RTEL1   15888
LRG (Locus Reference Genomic)LRG_1149
Cards
Entrez_Gene (NCBI)RTEL1    regulator of telomere elongation helicase 1
AliasesC20orf41; DKCA4; DKCB5; NHL; 
PFBMFT3; RTEL
GeneCards (Weizmann)RTEL1
Ensembl hg19 (Hinxton)ENSG00000258366 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258366 [Gene_View]  ENSG00000258366 [Sequence]  chr20:63658312-63696245 [Contig_View]  RTEL1 [Vega]
ICGC DataPortalENSG00000258366
TCGA cBioPortalRTEL1
AceView (NCBI)RTEL1
Genatlas (Paris)RTEL1
SOURCE (Princeton)RTEL1
Genetics Home Reference (NIH)RTEL1
Genomic and cartography
GoldenPath hg38 (UCSC)RTEL1  -     chr20:63658312-63696245 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTEL1  -     20q13.33   [Description]    (hg19-Feb_2009)
GoldenPathRTEL1 - 20q13.33 [CytoView hg19]  RTEL1 - 20q13.33 [CytoView hg38]
ImmunoBaseENSG00000258366
Genome Data Viewer NCBIRTEL1 [Mapview hg19]  
OMIM608833   615190   616373   
Gene and transcription
Genbank (Entrez)AF217795 AK000485 AK299332 AK302508 AK304798
RefSeq transcript (Entrez)NM_001283009 NM_001283010 NM_016434 NM_032957
Consensus coding sequences : CCDS (NCBI)RTEL1
Gene ExpressionRTEL1 [ NCBI-GEO ]   RTEL1 [ EBI - ARRAY_EXPRESS ]   RTEL1 [ SEEK ]   RTEL1 [ MEM ]
Gene Expression Viewer (FireBrowse)RTEL1 [ Firebrowse - Broad ]
GenevisibleExpression of RTEL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51750
GTEX Portal (Tissue expression)RTEL1
Human Protein AtlasENSG00000258366-RTEL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RTEL1
Human Protein Atlas [tissue]ENSG00000258366-RTEL1 [tissue]
HPRD15281
Protein Interaction databases
BioGRIDRTEL1
STRING (EMBL)RTEL1
ZODIACRTEL1
Ontologies - Pathways
Litterature
PubMed89 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRTEL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:29:47 CEST 2021

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