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RTF2 (replication termination factor 2)

Identity

Alias (NCBI)C20orf43
CDAO5
HSPC164
RTFDC1
SHUJUN-3
HGNC (Hugo) RTF2
LocusID (NCBI) 51507
Atlas_Id 80658
Location 20q13.31  [Link to chromosome band 20q13]
Location_base_pair Starts at 56468585 and ends at 56518886 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)RTF2   15890
Cards
Entrez_Gene (NCBI)RTF2  51507  replication termination factor 2
AliasesC20orf43; CDAO5; HSPC164; RTFDC1; 
SHUJUN-3
GeneCards (Weizmann)RTF2
Ensembl hg19 (Hinxton)ENSG00000022277 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000022277 [Gene_View]  ENSG00000022277 [Sequence]  chr20:56468585-56518886 [Contig_View]  RTF2 [Vega]
ICGC DataPortalENSG00000022277
TCGA cBioPortalRTF2
AceView (NCBI)RTF2
Genatlas (Paris)RTF2
WikiGenes51507
SOURCE (Princeton)RTF2
Genetics Home Reference (NIH)RTF2
Genomic and cartography
GoldenPath hg38 (UCSC)RTF2  -     chr20:56468585-56518886 +  20q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTF2  -     20q13.31   [Description]    (hg19-Feb_2009)
GoldenPathRTF2 - 20q13.31 [CytoView hg19]  RTF2 - 20q13.31 [CytoView hg38]
ImmunoBaseENSG00000022277
genome Data Viewer NCBIRTF2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA814039 AF117231 AF161513 AF161518 AF212244
RefSeq transcript (Entrez)NM_001283035 NM_001283036 NM_001283037 NM_016407
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RTF2
Alternative Splicing GalleryENSG00000022277
Gene ExpressionRTF2 [ NCBI-GEO ]   RTF2 [ EBI - ARRAY_EXPRESS ]   RTF2 [ SEEK ]   RTF2 [ MEM ]
Gene Expression Viewer (FireBrowse)RTF2 [ Firebrowse - Broad ]
GenevisibleExpression of RTF2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51507
GTEX Portal (Tissue expression)RTF2
Human Protein AtlasENSG00000022277-RTF2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BY42   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BY42  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BY42
Splice isoforms : SwissVarQ9BY42
PhosPhoSitePlusQ9BY42
Domains : Interpro (EBI)Rtf2    Rtf2_RING-finger   
Domain families : Pfam (Sanger)Rtf2 (PF04641)   
Domain families : Pfam (NCBI)pfam04641   
Conserved Domain (NCBI)RTF2
DMDM Disease mutations51507
Blocks (Seattle)RTF2
SuperfamilyQ9BY42
Human Protein Atlas [tissue]ENSG00000022277-RTF2 [tissue]
Peptide AtlasQ9BY42
IPIIPI00297121   IPI00218962   IPI00909332   IPI00385350   IPI01015927   IPI00792861   
Protein Interaction databases
DIP (DOE-UCLA)Q9BY42
IntAct (EBI)Q9BY42
FunCoupENSG00000022277
BioGRIDRTF2
STRING (EMBL)RTF2
ZODIACRTF2
Ontologies - Pathways
QuickGOQ9BY42
Ontology : AmiGOmolecular_function  DNA binding  protein binding  nucleus  replication fork  biological_process  site-specific DNA replication termination at RTS1 barrier  cellular response to hydroxyurea  regulation of DNA stability  mitotic DNA replication termination  
Ontology : EGO-EBImolecular_function  DNA binding  protein binding  nucleus  replication fork  biological_process  site-specific DNA replication termination at RTS1 barrier  cellular response to hydroxyurea  regulation of DNA stability  mitotic DNA replication termination  
NDEx NetworkRTF2
Atlas of Cancer Signalling NetworkRTF2
Wikipedia pathwaysRTF2
Orthology - Evolution
OrthoDB51507
GeneTree (enSembl)ENSG00000022277
Phylogenetic Trees/Animal Genes : TreeFamRTF2
HOGENOMQ9BY42
Homologs : HomoloGeneRTF2
Homology/Alignments : Family Browser (UCSC)RTF2
Gene fusions - Rearrangements
Fusion : QuiverRTF2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTF2
dbVarRTF2
ClinVarRTF2
1000_GenomesRTF2 
Exome Variant ServerRTF2
GNOMAD BrowserENSG00000022277
Varsome BrowserRTF2
Genetic variants : HAPMAP51507
Genomic Variants (DGV)RTF2 [DGVbeta]
DECIPHERRTF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRTF2 
Mutations
ICGC Data PortalRTF2 
TCGA Data PortalRTF2 
Broad Tumor PortalRTF2
OASIS PortalRTF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRTF2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRTF2
Mutations and Diseases : HGMDRTF2
BioMutasearch RTF2
DgiDB (Drug Gene Interaction Database)RTF2
DoCM (Curated mutations)RTF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTF2 (select a term)
intoGenRTF2
Cancer3DRTF2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRTF2
MedgenRTF2
Genetic Testing Registry RTF2
NextProtQ9BY42 [Medical]
TSGene51507
GENETestsRTF2
Target ValidationRTF2
Huge Navigator RTF2 [HugePedia]
snp3D : Map Gene to Disease51507
BioCentury BCIQRTF2
ClinGenRTF2
Clinical trials, drugs, therapy
Protein Interactions : CTD51507
Pharm GKB GenePA25756
Clinical trialRTF2
Miscellaneous
canSAR (ICR)RTF2 (select the gene name)
HarmonizomeRTF2
DataMed IndexRTF2
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTF2
EVEXRTF2
GoPubMedRTF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:26:32 CEST 2020

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