Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RTFDC1 (replication termination factor 2 domain containing 1)

Identity

Alias_namesC20orf43
chromosome 20 open reading frame 43
Alias_symbol (synonym)HSPC164
CDAO5
Other aliasSHUJUN-3
HGNC (Hugo) RTFDC1
LocusID (NCBI) 51507
Atlas_Id 72924
Location 20q13.31  [Link to chromosome band 20q13]
Location_base_pair Starts at 55043641 and ends at 55093942 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RTFDC1 (20q13.31) / PARD6B (20q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RTFDC1   15890
Cards
Entrez_Gene (NCBI)RTFDC1  51507  replication termination factor 2 domain containing 1
AliasesC20orf43; CDAO5; HSPC164; SHUJUN-3
GeneCards (Weizmann)RTFDC1
Ensembl hg19 (Hinxton)ENSG00000022277 [Gene_View]  chr20:55043641-55093942 [Contig_View]  RTFDC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000022277 [Gene_View]  chr20:55043641-55093942 [Contig_View]  RTFDC1 [Vega]
ICGC DataPortalENSG00000022277
TCGA cBioPortalRTFDC1
AceView (NCBI)RTFDC1
Genatlas (Paris)RTFDC1
WikiGenes51507
SOURCE (Princeton)RTFDC1
Genetics Home Reference (NIH)RTFDC1
Genomic and cartography
GoldenPath hg19 (UCSC)RTFDC1  -     chr20:55043641-55093942 +  20q13.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RTFDC1  -     20q13.31   [Description]    (hg38-Dec_2013)
EnsemblRTFDC1 - 20q13.31 [CytoView hg19]  RTFDC1 - 20q13.31 [CytoView hg38]
Mapping of homologs : NCBIRTFDC1 [Mapview hg19]  RTFDC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA814039 AF117231 AF161513 AF161518 AF212244
RefSeq transcript (Entrez)NM_001283035 NM_001283036 NM_001283037 NM_016407
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)RTFDC1
Cluster EST : UnigeneHs.517134 [ NCBI ]
CGAP (NCI)Hs.517134
Alternative Splicing GalleryENSG00000022277
Gene ExpressionRTFDC1 [ NCBI-GEO ]   RTFDC1 [ EBI - ARRAY_EXPRESS ]   RTFDC1 [ SEEK ]   RTFDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)RTFDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51507
GTEX Portal (Tissue expression)RTFDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BY42   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BY42  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BY42
Splice isoforms : SwissVarQ9BY42
PhosPhoSitePlusQ9BY42
Domains : Interpro (EBI)DUF602    Rtf2_RING-finger   
Domain families : Pfam (Sanger)Rtf2 (PF04641)   
Domain families : Pfam (NCBI)pfam04641   
Conserved Domain (NCBI)RTFDC1
DMDM Disease mutations51507
Blocks (Seattle)RTFDC1
SuperfamilyQ9BY42
Human Protein AtlasENSG00000022277
Peptide AtlasQ9BY42
HPRD12769
IPIIPI00297121   IPI00218962   IPI00909332   IPI00385350   IPI01015927   IPI00792861   
Protein Interaction databases
DIP (DOE-UCLA)Q9BY42
IntAct (EBI)Q9BY42
FunCoupENSG00000022277
BioGRIDRTFDC1
STRING (EMBL)RTFDC1
ZODIACRTFDC1
Ontologies - Pathways
QuickGOQ9BY42
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkRTFDC1
Atlas of Cancer Signalling NetworkRTFDC1
Wikipedia pathwaysRTFDC1
Orthology - Evolution
OrthoDB51507
GeneTree (enSembl)ENSG00000022277
Phylogenetic Trees/Animal Genes : TreeFamRTFDC1
HOVERGENQ9BY42
HOGENOMQ9BY42
Homologs : HomoloGeneRTFDC1
Homology/Alignments : Family Browser (UCSC)RTFDC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTFDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTFDC1
dbVarRTFDC1
ClinVarRTFDC1
1000_GenomesRTFDC1 
Exome Variant ServerRTFDC1
ExAC (Exome Aggregation Consortium)RTFDC1 (select the gene name)
Genetic variants : HAPMAP51507
Genomic Variants (DGV)RTFDC1 [DGVbeta]
DECIPHER (Syndromes)20:55043641-55093942  ENSG00000022277
CONAN: Copy Number AnalysisRTFDC1 
Mutations
ICGC Data PortalRTFDC1 
TCGA Data PortalRTFDC1 
Broad Tumor PortalRTFDC1
OASIS PortalRTFDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRTFDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRTFDC1
BioMutasearch RTFDC1
DgiDB (Drug Gene Interaction Database)RTFDC1
DoCM (Curated mutations)RTFDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTFDC1 (select a term)
intoGenRTFDC1
Cancer3DRTFDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRTFDC1
Genetic Testing Registry RTFDC1
NextProtQ9BY42 [Medical]
TSGene51507
GENETestsRTFDC1
Huge Navigator RTFDC1 [HugePedia]
snp3D : Map Gene to Disease51507
BioCentury BCIQRTFDC1
ClinGenRTFDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51507
Chemical/Pharm GKB GenePA25756
Clinical trialRTFDC1
Miscellaneous
canSAR (ICR)RTFDC1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTFDC1
EVEXRTFDC1
GoPubMedRTFDC1
iHOPRTFDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:42:07 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.