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RTKN (rhotekin)

Identity

Alias (NCBI)-
HGNC (Hugo) RTKN
HGNC Alias symbB5
LocusID (NCBI) 6242
Atlas_Id 43808
Location 2p13.1  [Link to chromosome band 2p13]
Location_base_pair Starts at 74425861 and ends at 74440583 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CACNB4 (2q23.3) / RTKN (2p13.1)MAML2 (11q21) / RTKN (2p13.1)RTKN (2p13.1) / COX6B1 (19q13.12)
RTKN (2p13.1) / TGM2 (20q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RTKN   10466
Cards
Entrez_Gene (NCBI)RTKN    rhotekin
Aliases
GeneCards (Weizmann)RTKN
Ensembl hg19 (Hinxton)ENSG00000114993 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114993 [Gene_View]  ENSG00000114993 [Sequence]  chr2:74425861-74440583 [Contig_View]  RTKN [Vega]
ICGC DataPortalENSG00000114993
TCGA cBioPortalRTKN
AceView (NCBI)RTKN
Genatlas (Paris)RTKN
SOURCE (Princeton)RTKN
Genetics Home Reference (NIH)RTKN
Genomic and cartography
GoldenPath hg38 (UCSC)RTKN  -     chr2:74425861-74440583 -  2p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTKN  -     2p13.1   [Description]    (hg19-Feb_2009)
GoldenPathRTKN - 2p13.1 [CytoView hg19]  RTKN - 2p13.1 [CytoView hg38]
ImmunoBaseENSG00000114993
Genome Data Viewer NCBIRTKN [Mapview hg19]  
OMIM602288   
Gene and transcription
Genbank (Entrez)AF049227 AF290512 AK307302 AK308519 AK310036
RefSeq transcript (Entrez)NM_001015055 NM_001015056 NM_033046
Consensus coding sequences : CCDS (NCBI)RTKN
Gene ExpressionRTKN [ NCBI-GEO ]   RTKN [ EBI - ARRAY_EXPRESS ]   RTKN [ SEEK ]   RTKN [ MEM ]
Gene Expression Viewer (FireBrowse)RTKN [ Firebrowse - Broad ]
GenevisibleExpression of RTKN in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6242
GTEX Portal (Tissue expression)RTKN
Human Protein AtlasENSG00000114993-RTKN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BST9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BST9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BST9
PhosPhoSitePlusQ9BST9
Domaine pattern : Prosite (Expaxy)PH_DOMAIN (PS50003)    REM_1 (PS51860)   
Domains : Interpro (EBI)AHD    HR1_rho-bd    PH-like_dom_sf    PH_domain    RTKN   
Domain families : Pfam (Sanger)Anillin (PF08174)    PH (PF00169)   
Domain families : Pfam (NCBI)pfam08174    pfam00169   
Domain families : Smart (EMBL)Hr1 (SM00742)  PH (SM00233)  
Conserved Domain (NCBI)RTKN
SuperfamilyQ9BST9
AlphaFold pdb e-kbQ9BST9   
Human Protein Atlas [tissue]ENSG00000114993-RTKN [tissue]
HPRD03795
Protein Interaction databases
DIP (DOE-UCLA)Q9BST9
IntAct (EBI)Q9BST9
BioGRIDRTKN
STRING (EMBL)RTKN
ZODIACRTKN
Ontologies - Pathways
QuickGOQ9BST9
Ontology : AmiGOmitotic cytokinesis  actomyosin contractile ring assembly  GTPase inhibitor activity  GTPase inhibitor activity  protein binding  GTP binding  cellular_component  actomyosin contractile ring  cytosol  apoptotic process  signal transduction  Rho protein signal transduction  septin ring organization  small GTPase binding  regulation of apoptotic process  regulation of catalytic activity  
Ontology : EGO-EBImitotic cytokinesis  actomyosin contractile ring assembly  GTPase inhibitor activity  GTPase inhibitor activity  protein binding  GTP binding  cellular_component  actomyosin contractile ring  cytosol  apoptotic process  signal transduction  Rho protein signal transduction  septin ring organization  small GTPase binding  regulation of apoptotic process  regulation of catalytic activity  
NDEx NetworkRTKN
Atlas of Cancer Signalling NetworkRTKN
Wikipedia pathwaysRTKN
Orthology - Evolution
OrthoDB6242
GeneTree (enSembl)ENSG00000114993
Phylogenetic Trees/Animal Genes : TreeFamRTKN
Homologs : HomoloGeneRTKN
Homology/Alignments : Family Browser (UCSC)RTKN
Gene fusions - Rearrangements
Fusion : QuiverRTKN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTKN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTKN
dbVarRTKN
ClinVarRTKN
MonarchRTKN
1000_GenomesRTKN 
Exome Variant ServerRTKN
GNOMAD BrowserENSG00000114993
Varsome BrowserRTKN
ACMGRTKN variants
VarityQ9BST9
Genomic Variants (DGV)RTKN [DGVbeta]
DECIPHERRTKN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRTKN 
Mutations
ICGC Data PortalRTKN 
TCGA Data PortalRTKN 
Broad Tumor PortalRTKN
OASIS PortalRTKN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRTKN  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRTKN
Mutations and Diseases : HGMDRTKN
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRTKN
DgiDB (Drug Gene Interaction Database)RTKN
DoCM (Curated mutations)RTKN
CIViC (Clinical Interpretations of Variants in Cancer)RTKN
Cancer3DRTKN
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602288   
Orphanet
DisGeNETRTKN
MedgenRTKN
Genetic Testing Registry RTKN
NextProtQ9BST9 [Medical]
GENETestsRTKN
Target ValidationRTKN
Huge Navigator RTKN [HugePedia]
ClinGenRTKN
Clinical trials, drugs, therapy
MyCancerGenomeRTKN
Protein Interactions : CTDRTKN
Pharm GKB GenePA34879
PharosQ9BST9
Clinical trialRTKN
Miscellaneous
canSAR (ICR)RTKN
HarmonizomeRTKN
DataMed IndexRTKN
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRTKN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:29:48 CEST 2021

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