Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RTL1 (retrotransposon Gag like 1)

Identity

Alias_symbol (synonym)PEG11
MART1
Mar1
Other aliasHUR1
SIRH2
HGNC (Hugo) RTL1
LocusID (NCBI) 388015
Atlas_Id 53432
Location 14q32.2  [Link to chromosome band 14q32]
Location_base_pair Starts at 100880655 and ends at 100884847 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RTL1 (14q32.2) / ATN1 (12p13.31)RTL1 (14q32.2) / ZNF664 (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RTL1   14665
LRG (Locus Reference Genomic)LRG_1059
Cards
Entrez_Gene (NCBI)RTL1  388015  retrotransposon Gag like 1
AliasesHUR1; MART1; Mar1; PEG11; 
SIRH2
GeneCards (Weizmann)RTL1
Ensembl hg19 (Hinxton)ENSG00000254656 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254656 [Gene_View]  chr14:100880655-100884847 [Contig_View]  RTL1 [Vega]
ICGC DataPortalENSG00000254656
TCGA cBioPortalRTL1
AceView (NCBI)RTL1
Genatlas (Paris)RTL1
WikiGenes388015
SOURCE (Princeton)RTL1
Genetics Home Reference (NIH)RTL1
Genomic and cartography
GoldenPath hg38 (UCSC)RTL1  -     chr14:100880655-100884847 -  14q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTL1  -     14q32.2   [Description]    (hg19-Feb_2009)
EnsemblRTL1 - 14q32.2 [CytoView hg19]  RTL1 - 14q32.2 [CytoView hg38]
Mapping of homologs : NCBIRTL1 [Mapview hg19]  RTL1 [Mapview hg38]
OMIM611896   
Gene and transcription
Genbank (Entrez)BC150617
RefSeq transcript (Entrez)NM_001134888
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RTL1
Cluster EST : UnigeneHs.298602 [ NCBI ]
CGAP (NCI)Hs.298602
Alternative Splicing GalleryENSG00000254656
Gene ExpressionRTL1 [ NCBI-GEO ]   RTL1 [ EBI - ARRAY_EXPRESS ]   RTL1 [ SEEK ]   RTL1 [ MEM ]
Gene Expression Viewer (FireBrowse)RTL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388015
GTEX Portal (Tissue expression)RTL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKG5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKG5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKG5
Splice isoforms : SwissVarA6NKG5
PhosPhoSitePlusA6NKG5
Domains : Interpro (EBI)DUF4939    LDOC1-rel    Peptidase_aspartic_dom   
Domain families : Pfam (Sanger)DUF4939 (PF16297)   
Domain families : Pfam (NCBI)pfam16297   
Conserved Domain (NCBI)RTL1
DMDM Disease mutations388015
Blocks (Seattle)RTL1
SuperfamilyA6NKG5
Human Protein AtlasENSG00000254656
Peptide AtlasA6NKG5
IPIIPI00739343   IPI00375947   
Protein Interaction databases
DIP (DOE-UCLA)A6NKG5
IntAct (EBI)A6NKG5
FunCoupENSG00000254656
BioGRIDRTL1
STRING (EMBL)RTL1
ZODIACRTL1
Ontologies - Pathways
QuickGOA6NKG5
Ontology : AmiGOmulticellular organism development  integral component of membrane  
Ontology : EGO-EBImulticellular organism development  integral component of membrane  
NDEx NetworkRTL1
Atlas of Cancer Signalling NetworkRTL1
Wikipedia pathwaysRTL1
Orthology - Evolution
OrthoDB388015
GeneTree (enSembl)ENSG00000254656
Phylogenetic Trees/Animal Genes : TreeFamRTL1
HOVERGENA6NKG5
HOGENOMA6NKG5
Homologs : HomoloGeneRTL1
Homology/Alignments : Family Browser (UCSC)RTL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTL1
dbVarRTL1
ClinVarRTL1
1000_GenomesRTL1 
Exome Variant ServerRTL1
ExAC (Exome Aggregation Consortium)RTL1 (select the gene name)
Genetic variants : HAPMAP388015
Genomic Variants (DGV)RTL1 [DGVbeta]
DECIPHERRTL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRTL1 
Mutations
ICGC Data PortalRTL1 
TCGA Data PortalRTL1 
Broad Tumor PortalRTL1
OASIS PortalRTL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRTL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRTL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RTL1
DgiDB (Drug Gene Interaction Database)RTL1
DoCM (Curated mutations)RTL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTL1 (select a term)
intoGenRTL1
Cancer3DRTL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611896   
Orphanet19758    19759    19761    19760    12808    12843   
MedgenRTL1
Genetic Testing Registry RTL1
NextProtA6NKG5 [Medical]
TSGene388015
GENETestsRTL1
Huge Navigator RTL1 [HugePedia]
snp3D : Map Gene to Disease388015
BioCentury BCIQRTL1
ClinGenRTL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388015
Chemical/Pharm GKB GenePA143485603
Clinical trialRTL1
Miscellaneous
canSAR (ICR)RTL1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTL1
EVEXRTL1
GoPubMedRTL1
iHOPRTL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:35:51 CEST 2017

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