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RTL10 (retrotransposon Gag like 10)

Identity

Other aliasBOP
C22orf29
HGNC (Hugo) RTL10
LocusID (NCBI) 79680
Atlas_Id 56832
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 19846138 and ends at 19854848 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)RTL10   26112
Cards
Entrez_Gene (NCBI)RTL10  79680  retrotransposon Gag like 10
AliasesBOP; C22orf29
GeneCards (Weizmann)RTL10
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:19846138-19854848 [Contig_View]  RTL10 [Vega]
TCGA cBioPortalRTL10
AceView (NCBI)RTL10
Genatlas (Paris)RTL10
WikiGenes79680
SOURCE (Princeton)RTL10
Genetics Home Reference (NIH)RTL10
Genomic and cartography
GoldenPath hg38 (UCSC)RTL10  -     chr22:19846138-19854848 -  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTL10  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblRTL10 - 22q11.21 [CytoView hg19]  RTL10 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIRTL10 [Mapview hg19]  RTL10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024778 AK026924 AK225088 AK291262 AL832509
RefSeq transcript (Entrez)NM_024627
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RTL10
Cluster EST : UnigeneHs.105642 [ NCBI ]
CGAP (NCI)Hs.105642
Gene ExpressionRTL10 [ NCBI-GEO ]   RTL10 [ EBI - ARRAY_EXPRESS ]   RTL10 [ SEEK ]   RTL10 [ MEM ]
Gene Expression Viewer (FireBrowse)RTL10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79680
GTEX Portal (Tissue expression)RTL10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L3V2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L3V2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L3V2
Splice isoforms : SwissVarQ7L3V2
PhosPhoSitePlusQ7L3V2
Domains : Interpro (EBI)Bop    DUF4939    LDOC1-rel   
Domain families : Pfam (Sanger)DUF4939 (PF16297)   
Domain families : Pfam (NCBI)pfam16297   
Conserved Domain (NCBI)RTL10
DMDM Disease mutations79680
Blocks (Seattle)RTL10
SuperfamilyQ7L3V2
Peptide AtlasQ7L3V2
IPIIPI00472049   IPI00878559   
Protein Interaction databases
DIP (DOE-UCLA)Q7L3V2
IntAct (EBI)Q7L3V2
BioGRIDRTL10
STRING (EMBL)RTL10
ZODIACRTL10
Ontologies - Pathways
QuickGOQ7L3V2
Ontology : AmiGOprotein binding  mitochondrion  regulation of mitochondrial membrane potential  mitochondrial outer membrane permeabilization  
Ontology : EGO-EBIprotein binding  mitochondrion  regulation of mitochondrial membrane potential  mitochondrial outer membrane permeabilization  
NDEx NetworkRTL10
Atlas of Cancer Signalling NetworkRTL10
Wikipedia pathwaysRTL10
Orthology - Evolution
OrthoDB79680
Phylogenetic Trees/Animal Genes : TreeFamRTL10
HOVERGENQ7L3V2
HOGENOMQ7L3V2
Homologs : HomoloGeneRTL10
Homology/Alignments : Family Browser (UCSC)RTL10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTL10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTL10
dbVarRTL10
ClinVarRTL10
1000_GenomesRTL10 
Exome Variant ServerRTL10
ExAC (Exome Aggregation Consortium)RTL10 (select the gene name)
Genetic variants : HAPMAP79680
Genomic Variants (DGV)RTL10 [DGVbeta]
DECIPHERRTL10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRTL10 
Mutations
ICGC Data PortalRTL10 
TCGA Data PortalRTL10 
Broad Tumor PortalRTL10
OASIS PortalRTL10 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRTL10
BioMutasearch RTL10
DgiDB (Drug Gene Interaction Database)RTL10
DoCM (Curated mutations)RTL10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTL10 (select a term)
intoGenRTL10
Cancer3DRTL10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRTL10
Genetic Testing Registry RTL10
NextProtQ7L3V2 [Medical]
TSGene79680
GENETestsRTL10
Target ValidationRTL10
Huge Navigator RTL10 [HugePedia]
snp3D : Map Gene to Disease79680
BioCentury BCIQRTL10
ClinGenRTL10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79680
Chemical/Pharm GKB GenePA145149415
Clinical trialRTL10
Miscellaneous
canSAR (ICR)RTL10 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTL10
EVEXRTL10
GoPubMedRTL10
iHOPRTL10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:29:42 CEST 2017

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