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RTL5 (retrotransposon Gag like 5)

Identity

Alias_namesRGAG4
retrotransposon gag domain containing 4
Alias_symbol (synonym)KIAA2001
Mar5
Mart5
SIRH8
Other alias6430402L03Rik
MAR5
MART5
HGNC (Hugo) RTL5
LocusID (NCBI) 340526
Atlas_Id 79109
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 72127111 and ends at 72131901 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RTL5   29430
Cards
Entrez_Gene (NCBI)RTL5  340526  retrotransposon Gag like 5
Aliases6430402L03Rik; MAR5; MART5; RGAG4; 
SIRH8
GeneCards (Weizmann)RTL5
Ensembl hg19 (Hinxton)ENSG00000242732 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000242732 [Gene_View]  chrX:72127111-72131901 [Contig_View]  RTL5 [Vega]
ICGC DataPortalENSG00000242732
TCGA cBioPortalRTL5
AceView (NCBI)RTL5
Genatlas (Paris)RTL5
WikiGenes340526
SOURCE (Princeton)RTL5
Genetics Home Reference (NIH)RTL5
Genomic and cartography
GoldenPath hg38 (UCSC)RTL5  -     chrX:72127111-72131901 -  Xq13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTL5  -     Xq13.1   [Description]    (hg19-Feb_2009)
EnsemblRTL5 - Xq13.1 [CytoView hg19]  RTL5 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBIRTL5 [Mapview hg19]  RTL5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB082532 AL359579 BC151224
RefSeq transcript (Entrez)NM_001024455
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RTL5
Cluster EST : UnigeneHs.512180 [ NCBI ]
CGAP (NCI)Hs.512180
Alternative Splicing GalleryENSG00000242732
Gene ExpressionRTL5 [ NCBI-GEO ]   RTL5 [ EBI - ARRAY_EXPRESS ]   RTL5 [ SEEK ]   RTL5 [ MEM ]
Gene Expression Viewer (FireBrowse)RTL5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340526
GTEX Portal (Tissue expression)RTL5
Human Protein AtlasENSG00000242732-RTL5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5HYW3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5HYW3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5HYW3
Splice isoforms : SwissVarQ5HYW3
PhosPhoSitePlusQ5HYW3
Domains : Interpro (EBI)DUF4939    LDOC1-rel   
Domain families : Pfam (Sanger)DUF4939 (PF16297)   
Domain families : Pfam (NCBI)pfam16297   
Conserved Domain (NCBI)RTL5
DMDM Disease mutations340526
Blocks (Seattle)RTL5
SuperfamilyQ5HYW3
Human Protein Atlas [tissue]ENSG00000242732-RTL5 [tissue]
Peptide AtlasQ5HYW3
IPIIPI00168399   
Protein Interaction databases
DIP (DOE-UCLA)Q5HYW3
IntAct (EBI)Q5HYW3
FunCoupENSG00000242732
BioGRIDRTL5
STRING (EMBL)RTL5
ZODIACRTL5
Ontologies - Pathways
QuickGOQ5HYW3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRTL5
Atlas of Cancer Signalling NetworkRTL5
Wikipedia pathwaysRTL5
Orthology - Evolution
OrthoDB340526
GeneTree (enSembl)ENSG00000242732
Phylogenetic Trees/Animal Genes : TreeFamRTL5
HOVERGENQ5HYW3
HOGENOMQ5HYW3
Homologs : HomoloGeneRTL5
Homology/Alignments : Family Browser (UCSC)RTL5
Gene fusions - Rearrangements
Tumor Fusion PortalRTL5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTL5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTL5
dbVarRTL5
ClinVarRTL5
1000_GenomesRTL5 
Exome Variant ServerRTL5
ExAC (Exome Aggregation Consortium)ENSG00000242732
GNOMAD BrowserENSG00000242732
Genetic variants : HAPMAP340526
Genomic Variants (DGV)RTL5 [DGVbeta]
DECIPHERRTL5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRTL5 
Mutations
ICGC Data PortalRTL5 
TCGA Data PortalRTL5 
Broad Tumor PortalRTL5
OASIS PortalRTL5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRTL5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RTL5
DgiDB (Drug Gene Interaction Database)RTL5
DoCM (Curated mutations)RTL5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTL5 (select a term)
intoGenRTL5
Cancer3DRTL5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRTL5
MedgenRTL5
Genetic Testing Registry RTL5
NextProtQ5HYW3 [Medical]
TSGene340526
GENETestsRTL5
Target ValidationRTL5
Huge Navigator RTL5 [HugePedia]
snp3D : Map Gene to Disease340526
BioCentury BCIQRTL5
ClinGenRTL5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340526
Chemical/Pharm GKB GenePA134992098
Clinical trialRTL5
Miscellaneous
canSAR (ICR)RTL5 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTL5
EVEXRTL5
GoPubMedRTL5
iHOPRTL5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:31 CET 2017

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