Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RTL6 (retrotransposon Gag like 6)

Identity

Alias_namesLDOC1L
leucine zipper down-regulated in cancer 1 like
LDOC1 like
Alias_symbol (synonym)dJ1033E15.2
DKFZp761O17121
Mart6
Mar6
SIRH3
Other alias
HGNC (Hugo) RTL6
LocusID (NCBI) 84247
Atlas_Id 79414
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 44492570 and ends at 44498125 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RTL6   13343
Cards
Entrez_Gene (NCBI)RTL6  84247  retrotransposon Gag like 6
AliasesLDOC1L; Mar6; Mart6; SIRH3; 
dJ1033E15.2
GeneCards (Weizmann)RTL6
Ensembl hg19 (Hinxton)ENSG00000188636 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188636 [Gene_View]  ENSG00000188636 [Sequence]  chr22:44492570-44498125 [Contig_View]  RTL6 [Vega]
ICGC DataPortalENSG00000188636
TCGA cBioPortalRTL6
AceView (NCBI)RTL6
Genatlas (Paris)RTL6
WikiGenes84247
SOURCE (Princeton)RTL6
Genetics Home Reference (NIH)RTL6
Genomic and cartography
GoldenPath hg38 (UCSC)RTL6  -     chr22:44492570-44498125 -  22q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTL6  -     22q13.31   [Description]    (hg19-Feb_2009)
EnsemblRTL6 - 22q13.31 [CytoView hg19]  RTL6 - 22q13.31 [CytoView hg38]
Mapping of homologs : NCBIRTL6 [Mapview hg19]  RTL6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126304 AK296479 AK313688 AL136553 BC018713
RefSeq transcript (Entrez)NM_032287
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RTL6
Cluster EST : UnigeneHs.744991 [ NCBI ]
CGAP (NCI)Hs.744991
Alternative Splicing GalleryENSG00000188636
Gene ExpressionRTL6 [ NCBI-GEO ]   RTL6 [ EBI - ARRAY_EXPRESS ]   RTL6 [ SEEK ]   RTL6 [ MEM ]
Gene Expression Viewer (FireBrowse)RTL6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84247
GTEX Portal (Tissue expression)RTL6
Human Protein AtlasENSG00000188636-RTL6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ICC9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ICC9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ICC9
Splice isoforms : SwissVarQ6ICC9
PhosPhoSitePlusQ6ICC9
Domains : Interpro (EBI)DUF4939    LDOC1-rel   
Domain families : Pfam (Sanger)DUF4939 (PF16297)   
Domain families : Pfam (NCBI)pfam16297   
Conserved Domain (NCBI)RTL6
DMDM Disease mutations84247
Blocks (Seattle)RTL6
SuperfamilyQ6ICC9
Human Protein Atlas [tissue]ENSG00000188636-RTL6 [tissue]
Peptide AtlasQ6ICC9
IPIIPI00419279   IPI00031082   
Protein Interaction databases
DIP (DOE-UCLA)Q6ICC9
IntAct (EBI)Q6ICC9
FunCoupENSG00000188636
BioGRIDRTL6
STRING (EMBL)RTL6
ZODIACRTL6
Ontologies - Pathways
QuickGOQ6ICC9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRTL6
Atlas of Cancer Signalling NetworkRTL6
Wikipedia pathwaysRTL6
Orthology - Evolution
OrthoDB84247
GeneTree (enSembl)ENSG00000188636
Phylogenetic Trees/Animal Genes : TreeFamRTL6
HOVERGENQ6ICC9
HOGENOMQ6ICC9
Homologs : HomoloGeneRTL6
Homology/Alignments : Family Browser (UCSC)RTL6
Gene fusions - Rearrangements
Fusion : QuiverRTL6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTL6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTL6
dbVarRTL6
ClinVarRTL6
1000_GenomesRTL6 
Exome Variant ServerRTL6
ExAC (Exome Aggregation Consortium)ENSG00000188636
GNOMAD BrowserENSG00000188636
Varsome BrowserRTL6
Genetic variants : HAPMAP84247
Genomic Variants (DGV)RTL6 [DGVbeta]
DECIPHERRTL6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRTL6 
Mutations
ICGC Data PortalRTL6 
TCGA Data PortalRTL6 
Broad Tumor PortalRTL6
OASIS PortalRTL6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRTL6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RTL6
DgiDB (Drug Gene Interaction Database)RTL6
DoCM (Curated mutations)RTL6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTL6 (select a term)
intoGenRTL6
Cancer3DRTL6(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRTL6
MedgenRTL6
Genetic Testing Registry RTL6
NextProtQ6ICC9 [Medical]
TSGene84247
GENETestsRTL6
Target ValidationRTL6
Huge Navigator RTL6 [HugePedia]
snp3D : Map Gene to Disease84247
BioCentury BCIQRTL6
ClinGenRTL6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84247
Chemical/Pharm GKB GenePA134971270
Clinical trialRTL6
Miscellaneous
canSAR (ICR)RTL6 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTL6
EVEXRTL6
GoPubMedRTL6
iHOPRTL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:27:51 CEST 2018
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