Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RTL8A (retrotransposon Gag like 8A)

Identity

Alias_namesFAM127B
family with sequence similarity 127, member B
family with sequence similarity 127 member B
Alias_symbol (synonym)DKFZP564B147
MAR8A
CXX1b
SIRH6
Other alias
HGNC (Hugo) RTL8A
LocusID (NCBI) 26071
Atlas_Id 79425
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 135050933 and ends at 135052191 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RTL8A   24514
Cards
Entrez_Gene (NCBI)RTL8A  26071  retrotransposon Gag like 8A
AliasesCXX1b; FAM127B; MAR8A; SIRH6
GeneCards (Weizmann)RTL8A
Ensembl hg19 (Hinxton)ENSG00000203950 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203950 [Gene_View]  chrX:135050933-135052191 [Contig_View]  RTL8A [Vega]
ICGC DataPortalENSG00000203950
TCGA cBioPortalRTL8A
AceView (NCBI)RTL8A
Genatlas (Paris)RTL8A
WikiGenes26071
SOURCE (Princeton)RTL8A
Genetics Home Reference (NIH)RTL8A
Genomic and cartography
GoldenPath hg38 (UCSC)RTL8A  -     chrX:135050933-135052191 -  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTL8A  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblRTL8A - Xq26.3 [CytoView hg19]  RTL8A - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBIRTL8A [Mapview hg19]  RTL8A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL117556 BC000393 BC008096 BC019300 BC071991
RefSeq transcript (Entrez)NM_001078172 NM_001134321 NM_015582
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RTL8A
Cluster EST : UnigeneHs.460924 [ NCBI ]
CGAP (NCI)Hs.460924
Alternative Splicing GalleryENSG00000203950
Gene ExpressionRTL8A [ NCBI-GEO ]   RTL8A [ EBI - ARRAY_EXPRESS ]   RTL8A [ SEEK ]   RTL8A [ MEM ]
Gene Expression Viewer (FireBrowse)RTL8A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26071
GTEX Portal (Tissue expression)RTL8A
Human Protein AtlasENSG00000203950-RTL8A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWD3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWD3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWD3
Splice isoforms : SwissVarQ9BWD3
PhosPhoSitePlusQ9BWD3
Domains : Interpro (EBI)DUF4939    LDOC1-rel   
Domain families : Pfam (Sanger)DUF4939 (PF16297)   
Domain families : Pfam (NCBI)pfam16297   
Conserved Domain (NCBI)RTL8A
DMDM Disease mutations26071
Blocks (Seattle)RTL8A
SuperfamilyQ9BWD3
Human Protein Atlas [tissue]ENSG00000203950-RTL8A [tissue]
Peptide AtlasQ9BWD3
IPIIPI00852644   IPI00174818   IPI00884404   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWD3
IntAct (EBI)Q9BWD3
FunCoupENSG00000203950
BioGRIDRTL8A
STRING (EMBL)RTL8A
ZODIACRTL8A
Ontologies - Pathways
QuickGOQ9BWD3
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkRTL8A
Atlas of Cancer Signalling NetworkRTL8A
Wikipedia pathwaysRTL8A
Orthology - Evolution
OrthoDB26071
GeneTree (enSembl)ENSG00000203950
Phylogenetic Trees/Animal Genes : TreeFamRTL8A
HOVERGENQ9BWD3
HOGENOMQ9BWD3
Homologs : HomoloGeneRTL8A
Homology/Alignments : Family Browser (UCSC)RTL8A
Gene fusions - Rearrangements
Tumor Fusion PortalRTL8A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTL8A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTL8A
dbVarRTL8A
ClinVarRTL8A
1000_GenomesRTL8A 
Exome Variant ServerRTL8A
ExAC (Exome Aggregation Consortium)ENSG00000203950
GNOMAD BrowserENSG00000203950
Genetic variants : HAPMAP26071
Genomic Variants (DGV)RTL8A [DGVbeta]
DECIPHERRTL8A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRTL8A 
Mutations
ICGC Data PortalRTL8A 
TCGA Data PortalRTL8A 
Broad Tumor PortalRTL8A
OASIS PortalRTL8A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRTL8A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RTL8A
DgiDB (Drug Gene Interaction Database)RTL8A
DoCM (Curated mutations)RTL8A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTL8A (select a term)
intoGenRTL8A
Cancer3DRTL8A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRTL8A
MedgenRTL8A
Genetic Testing Registry RTL8A
NextProtQ9BWD3 [Medical]
TSGene26071
GENETestsRTL8A
Target ValidationRTL8A
Huge Navigator RTL8A [HugePedia]
snp3D : Map Gene to Disease26071
BioCentury BCIQRTL8A
ClinGenRTL8A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26071
Chemical/Pharm GKB GenePA162385915
Clinical trialRTL8A
Miscellaneous
canSAR (ICR)RTL8A (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTL8A
EVEXRTL8A
GoPubMedRTL8A
iHOPRTL8A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 14:00:32 CET 2017

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