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RTL8B (retrotransposon Gag like 8B)

Identity

Alias_namesFAM127C
family with sequence similarity 127, member C
family with sequence similarity 127 member C
Alias_symbol (synonym)MAR8B
CXX1c
SIRH4
Other alias
HGNC (Hugo) RTL8B
LocusID (NCBI) 441518
Atlas_Id 79995
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 135020504 and ends at 135022536 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RTL8B   33156
Cards
Entrez_Gene (NCBI)RTL8B  441518  retrotransposon Gag like 8B
AliasesCXX1c; FAM127C; MAR8B; SIRH4
GeneCards (Weizmann)RTL8B
Ensembl hg19 (Hinxton)ENSG00000212747 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212747 [Gene_View]  chrX:135020504-135022536 [Contig_View]  RTL8B [Vega]
ICGC DataPortalENSG00000212747
TCGA cBioPortalRTL8B
AceView (NCBI)RTL8B
Genatlas (Paris)RTL8B
WikiGenes441518
SOURCE (Princeton)RTL8B
Genetics Home Reference (NIH)RTL8B
Genomic and cartography
GoldenPath hg38 (UCSC)RTL8B  -     chrX:135020504-135022536 -  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTL8B  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblRTL8B - Xq26.3 [CytoView hg19]  RTL8B - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBIRTL8B [Mapview hg19]  RTL8B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI569106 AK098443 BC048268 BC063496 BC073159
RefSeq transcript (Entrez)NM_001078173
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RTL8B
Cluster EST : UnigeneHs.378813 [ NCBI ]
CGAP (NCI)Hs.378813
Alternative Splicing GalleryENSG00000212747
Gene ExpressionRTL8B [ NCBI-GEO ]   RTL8B [ EBI - ARRAY_EXPRESS ]   RTL8B [ SEEK ]   RTL8B [ MEM ]
Gene Expression Viewer (FireBrowse)RTL8B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441518
GTEX Portal (Tissue expression)RTL8B
Human Protein AtlasENSG00000212747-RTL8B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17RB0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17RB0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17RB0
Splice isoforms : SwissVarQ17RB0
PhosPhoSitePlusQ17RB0
Domains : Interpro (EBI)DUF4939    LDOC1-rel   
Domain families : Pfam (Sanger)DUF4939 (PF16297)   
Domain families : Pfam (NCBI)pfam16297   
Conserved Domain (NCBI)RTL8B
DMDM Disease mutations441518
Blocks (Seattle)RTL8B
SuperfamilyQ17RB0
Human Protein Atlas [tissue]ENSG00000212747-RTL8B [tissue]
Peptide AtlasQ17RB0
IPIIPI00719804   IPI01011778   
Protein Interaction databases
DIP (DOE-UCLA)Q17RB0
IntAct (EBI)Q17RB0
FunCoupENSG00000212747
BioGRIDRTL8B
STRING (EMBL)RTL8B
ZODIACRTL8B
Ontologies - Pathways
QuickGOQ17RB0
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkRTL8B
Atlas of Cancer Signalling NetworkRTL8B
Wikipedia pathwaysRTL8B
Orthology - Evolution
OrthoDB441518
GeneTree (enSembl)ENSG00000212747
Phylogenetic Trees/Animal Genes : TreeFamRTL8B
HOVERGENQ17RB0
HOGENOMQ17RB0
Homologs : HomoloGeneRTL8B
Homology/Alignments : Family Browser (UCSC)RTL8B
Gene fusions - Rearrangements
Tumor Fusion PortalRTL8B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTL8B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTL8B
dbVarRTL8B
ClinVarRTL8B
1000_GenomesRTL8B 
Exome Variant ServerRTL8B
ExAC (Exome Aggregation Consortium)ENSG00000212747
GNOMAD BrowserENSG00000212747
Genetic variants : HAPMAP441518
Genomic Variants (DGV)RTL8B [DGVbeta]
DECIPHERRTL8B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRTL8B 
Mutations
ICGC Data PortalRTL8B 
TCGA Data PortalRTL8B 
Broad Tumor PortalRTL8B
OASIS PortalRTL8B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRTL8B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RTL8B
DgiDB (Drug Gene Interaction Database)RTL8B
DoCM (Curated mutations)RTL8B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTL8B (select a term)
intoGenRTL8B
Cancer3DRTL8B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRTL8B
MedgenRTL8B
Genetic Testing Registry RTL8B
NextProtQ17RB0 [Medical]
TSGene441518
GENETestsRTL8B
Target ValidationRTL8B
Huge Navigator RTL8B [HugePedia]
snp3D : Map Gene to Disease441518
BioCentury BCIQRTL8B
ClinGenRTL8B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441518
Chemical/Pharm GKB GenePA162385922
Clinical trialRTL8B
Miscellaneous
canSAR (ICR)RTL8B (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTL8B
EVEXRTL8B
GoPubMedRTL8B
iHOPRTL8B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 14:00:32 CET 2017

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