Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RTL8C (retrotransposon Gag like 8C)

Identity

Alias_namesCXX1
FAM127A
CAAX box 1
family with sequence similarity 127, member A
family with sequence similarity 127 member A
Alias_symbol (synonym)Mart8
Mar8
MAR8C
SIRH5
Other aliasMART8C
HGNC (Hugo) RTL8C
LocusID (NCBI) 8933
Atlas_Id 79551
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 135032303 and ends at 135033545 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RTL8C   2569
Cards
Entrez_Gene (NCBI)RTL8C  8933  retrotransposon Gag like 8C
AliasesCXX1; FAM127A; MAR8C; MART8C; 
Mar8; Mart8; SIRH5
GeneCards (Weizmann)RTL8C
Ensembl hg19 (Hinxton)ENSG00000134590 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134590 [Gene_View]  chrX:135032303-135033545 [Contig_View]  RTL8C [Vega]
ICGC DataPortalENSG00000134590
TCGA cBioPortalRTL8C
AceView (NCBI)RTL8C
Genatlas (Paris)RTL8C
WikiGenes8933
SOURCE (Princeton)RTL8C
Genetics Home Reference (NIH)RTL8C
Genomic and cartography
GoldenPath hg38 (UCSC)RTL8C  -     chrX:135032303-135033545 +  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTL8C  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblRTL8C - Xq26.3 [CytoView hg19]  RTL8C - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBIRTL8C [Mapview hg19]  RTL8C [Mapview hg38]
OMIM300213   
Gene and transcription
Genbank (Entrez)AF038168 AF052096 BC002385 BC002410 BC106076
RefSeq transcript (Entrez)NM_001078171 NM_003928
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RTL8C
Cluster EST : UnigeneHs.522789 [ NCBI ]
CGAP (NCI)Hs.522789
Alternative Splicing GalleryENSG00000134590
Gene ExpressionRTL8C [ NCBI-GEO ]   RTL8C [ EBI - ARRAY_EXPRESS ]   RTL8C [ SEEK ]   RTL8C [ MEM ]
Gene Expression Viewer (FireBrowse)RTL8C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)8933
GTEX Portal (Tissue expression)RTL8C
Human Protein AtlasENSG00000134590-RTL8C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RTL8C
DMDM Disease mutations8933
Blocks (Seattle)RTL8C
Human Protein Atlas [tissue]ENSG00000134590-RTL8C [tissue]
IPIIPI00816474   IPI00005727   
Protein Interaction databases
FunCoupENSG00000134590
BioGRIDRTL8C
STRING (EMBL)RTL8C
ZODIACRTL8C
Ontologies - Pathways
Huge Navigator RTL8C [HugePedia]
snp3D : Map Gene to Disease8933
BioCentury BCIQRTL8C
ClinGenRTL8C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8933
Chemical/Pharm GKB GenePA162385908
Clinical trialRTL8C
Miscellaneous
canSAR (ICR)RTL8C (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTL8C
EVEXRTL8C
GoPubMedRTL8C
iHOPRTL8C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:32 CET 2017

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