Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RTL9 (retrotransposon Gag like 9)

Identity

Alias_namesRGAG1
retrotransposon gag domain containing 1
Alias_symbol (synonym)KIAA1318
Mart9
Mar9
SIRH10
Other aliasMAR9
MART9
HGNC (Hugo) RTL9
LocusID (NCBI) 57529
Atlas_Id 79311
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 110419057 and ends at 110456334 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RTL9   29245
Cards
Entrez_Gene (NCBI)RTL9  57529  retrotransposon Gag like 9
AliasesMAR9; MART9; RGAG1; SIRH10
GeneCards (Weizmann)RTL9
Ensembl hg19 (Hinxton)ENSG00000243978 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243978 [Gene_View]  ENSG00000243978 [Sequence]  chrX:110419057-110456334 [Contig_View]  RTL9 [Vega]
ICGC DataPortalENSG00000243978
TCGA cBioPortalRTL9
AceView (NCBI)RTL9
Genatlas (Paris)RTL9
WikiGenes57529
SOURCE (Princeton)RTL9
Genetics Home Reference (NIH)RTL9
Genomic and cartography
GoldenPath hg38 (UCSC)RTL9  -     chrX:110419057-110456334 +  Xq23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTL9  -     Xq23   [Description]    (hg19-Feb_2009)
EnsemblRTL9 - Xq23 [CytoView hg19]  RTL9 - Xq23 [CytoView hg38]
Mapping of homologs : NCBIRTL9 [Mapview hg19]  RTL9 [Mapview hg38]
OMIM300965   
Gene and transcription
Genbank (Entrez)AB037739 AK302427 AY121804 BC113670 BC117184
RefSeq transcript (Entrez)NM_020769
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RTL9
Cluster EST : UnigeneHs.201071 [ NCBI ]
CGAP (NCI)Hs.201071
Alternative Splicing GalleryENSG00000243978
Gene ExpressionRTL9 [ NCBI-GEO ]   RTL9 [ EBI - ARRAY_EXPRESS ]   RTL9 [ SEEK ]   RTL9 [ MEM ]
Gene Expression Viewer (FireBrowse)RTL9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57529
GTEX Portal (Tissue expression)RTL9
Human Protein AtlasENSG00000243978-RTL9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NET4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NET4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NET4
Splice isoforms : SwissVarQ8NET4
PhosPhoSitePlusQ8NET4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RTL9
DMDM Disease mutations57529
Blocks (Seattle)RTL9
SuperfamilyQ8NET4
Human Protein Atlas [tissue]ENSG00000243978-RTL9 [tissue]
Peptide AtlasQ8NET4
IPIIPI00514462   IPI01015251   
Protein Interaction databases
DIP (DOE-UCLA)Q8NET4
IntAct (EBI)Q8NET4
FunCoupENSG00000243978
BioGRIDRTL9
STRING (EMBL)RTL9
ZODIACRTL9
Ontologies - Pathways
QuickGOQ8NET4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRTL9
Atlas of Cancer Signalling NetworkRTL9
Wikipedia pathwaysRTL9
Orthology - Evolution
OrthoDB57529
GeneTree (enSembl)ENSG00000243978
Phylogenetic Trees/Animal Genes : TreeFamRTL9
HOVERGENQ8NET4
HOGENOMQ8NET4
Homologs : HomoloGeneRTL9
Homology/Alignments : Family Browser (UCSC)RTL9
Gene fusions - Rearrangements
Fusion : QuiverRTL9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTL9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTL9
dbVarRTL9
ClinVarRTL9
1000_GenomesRTL9 
Exome Variant ServerRTL9
ExAC (Exome Aggregation Consortium)ENSG00000243978
GNOMAD BrowserENSG00000243978
Varsome BrowserRTL9
Genetic variants : HAPMAP57529
Genomic Variants (DGV)RTL9 [DGVbeta]
DECIPHERRTL9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRTL9 
Mutations
ICGC Data PortalRTL9 
TCGA Data PortalRTL9 
Broad Tumor PortalRTL9
OASIS PortalRTL9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRTL9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RTL9
DgiDB (Drug Gene Interaction Database)RTL9
DoCM (Curated mutations)RTL9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTL9 (select a term)
intoGenRTL9
Cancer3DRTL9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300965   
Orphanet
DisGeNETRTL9
MedgenRTL9
Genetic Testing Registry RTL9
NextProtQ8NET4 [Medical]
TSGene57529
GENETestsRTL9
Target ValidationRTL9
Huge Navigator RTL9 [HugePedia]
snp3D : Map Gene to Disease57529
BioCentury BCIQRTL9
ClinGenRTL9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57529
Chemical/Pharm GKB GenePA134934891
Clinical trialRTL9
Miscellaneous
canSAR (ICR)RTL9 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTL9
EVEXRTL9
GoPubMedRTL9
iHOPRTL9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:27:52 CEST 2018
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