Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RTN4RL1 (reticulon 4 receptor-like 1)

Identity

Alias_namesreticulon 4 receptor-like 1
Alias_symbol (synonym)NGRH2
NgR3
DKFZp547J144
Other alias
HGNC (Hugo) RTN4RL1
LocusID (NCBI) 146760
Atlas_Id 72926
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 1837971 and ends at 1928639 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
VPS53 (17p13.3) / RTN4RL1 (17p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RTN4RL1   21329
Cards
Entrez_Gene (NCBI)RTN4RL1  146760  reticulon 4 receptor-like 1
AliasesNGRH2; NgR3
GeneCards (Weizmann)RTN4RL1
Ensembl hg19 (Hinxton)ENSG00000185924 [Gene_View]  chr17:1837971-1928639 [Contig_View]  RTN4RL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000185924 [Gene_View]  chr17:1837971-1928639 [Contig_View]  RTN4RL1 [Vega]
ICGC DataPortalENSG00000185924
TCGA cBioPortalRTN4RL1
AceView (NCBI)RTN4RL1
Genatlas (Paris)RTN4RL1
WikiGenes146760
SOURCE (Princeton)RTN4RL1
Genetics Home Reference (NIH)RTN4RL1
Genomic and cartography
GoldenPath hg19 (UCSC)RTN4RL1  -     chr17:1837971-1928639 -  17p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RTN4RL1  -     17p13.3   [Description]    (hg38-Dec_2013)
EnsemblRTN4RL1 - 17p13.3 [CytoView hg19]  RTN4RL1 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBIRTN4RL1 [Mapview hg19]  RTN4RL1 [Mapview hg38]
OMIM610461   
Gene and transcription
Genbank (Entrez)AF532859 AI680692 AL535679 AL834409 AY250219
RefSeq transcript (Entrez)NM_178568
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)RTN4RL1
Cluster EST : UnigeneHs.22917 [ NCBI ]
CGAP (NCI)Hs.22917
Alternative Splicing GalleryENSG00000185924
Gene ExpressionRTN4RL1 [ NCBI-GEO ]   RTN4RL1 [ EBI - ARRAY_EXPRESS ]   RTN4RL1 [ SEEK ]   RTN4RL1 [ MEM ]
Gene Expression Viewer (FireBrowse)RTN4RL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146760
GTEX Portal (Tissue expression)RTN4RL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UN2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UN2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UN2
Splice isoforms : SwissVarQ86UN2
PhosPhoSitePlusQ86UN2
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRR-contain_N   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)RTN4RL1
DMDM Disease mutations146760
Blocks (Seattle)RTN4RL1
SuperfamilyQ86UN2
Human Protein AtlasENSG00000185924
Peptide AtlasQ86UN2
HPRD11523
IPIIPI00328745   
Protein Interaction databases
DIP (DOE-UCLA)Q86UN2
IntAct (EBI)Q86UN2
FunCoupENSG00000185924
BioGRIDRTN4RL1
STRING (EMBL)RTN4RL1
ZODIACRTN4RL1
Ontologies - Pathways
QuickGOQ86UN2
Ontology : AmiGOreceptor activity  protein binding  external side of plasma membrane  cell surface  axon regeneration  membrane raft  anchored component of plasma membrane  extracellular exosome  
Ontology : EGO-EBIreceptor activity  protein binding  external side of plasma membrane  cell surface  axon regeneration  membrane raft  anchored component of plasma membrane  extracellular exosome  
NDEx NetworkRTN4RL1
Atlas of Cancer Signalling NetworkRTN4RL1
Wikipedia pathwaysRTN4RL1
Orthology - Evolution
OrthoDB146760
GeneTree (enSembl)ENSG00000185924
Phylogenetic Trees/Animal Genes : TreeFamRTN4RL1
HOVERGENQ86UN2
HOGENOMQ86UN2
Homologs : HomoloGeneRTN4RL1
Homology/Alignments : Family Browser (UCSC)RTN4RL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTN4RL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTN4RL1
dbVarRTN4RL1
ClinVarRTN4RL1
1000_GenomesRTN4RL1 
Exome Variant ServerRTN4RL1
ExAC (Exome Aggregation Consortium)RTN4RL1 (select the gene name)
Genetic variants : HAPMAP146760
Genomic Variants (DGV)RTN4RL1 [DGVbeta]
DECIPHER (Syndromes)17:1837971-1928639  ENSG00000185924
CONAN: Copy Number AnalysisRTN4RL1 
Mutations
ICGC Data PortalRTN4RL1 
TCGA Data PortalRTN4RL1 
Broad Tumor PortalRTN4RL1
OASIS PortalRTN4RL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRTN4RL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRTN4RL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RTN4RL1
DgiDB (Drug Gene Interaction Database)RTN4RL1
DoCM (Curated mutations)RTN4RL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTN4RL1 (select a term)
intoGenRTN4RL1
Cancer3DRTN4RL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610461   
Orphanet
MedgenRTN4RL1
Genetic Testing Registry RTN4RL1
NextProtQ86UN2 [Medical]
TSGene146760
GENETestsRTN4RL1
Huge Navigator RTN4RL1 [HugePedia]
snp3D : Map Gene to Disease146760
BioCentury BCIQRTN4RL1
ClinGenRTN4RL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146760
Chemical/Pharm GKB GenePA134973992
Clinical trialRTN4RL1
Miscellaneous
canSAR (ICR)RTN4RL1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTN4RL1
EVEXRTN4RL1
GoPubMedRTN4RL1
iHOPRTN4RL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:07 CET 2017

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