Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RTN4RL2 (reticulon 4 receptor like 2)

Identity

Alias_symbol (synonym)NgR2
NGRH1
Other alias
HGNC (Hugo) RTN4RL2
LocusID (NCBI) 349667
Atlas_Id 72927
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 57460537 and ends at 57477539 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RTN4RL2   23053
Cards
Entrez_Gene (NCBI)RTN4RL2  349667  reticulon 4 receptor like 2
AliasesNGRH1; NgR2
GeneCards (Weizmann)RTN4RL2
Ensembl hg19 (Hinxton)ENSG00000186907 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186907 [Gene_View]  chr11:57460537-57477539 [Contig_View]  RTN4RL2 [Vega]
ICGC DataPortalENSG00000186907
TCGA cBioPortalRTN4RL2
AceView (NCBI)RTN4RL2
Genatlas (Paris)RTN4RL2
WikiGenes349667
SOURCE (Princeton)RTN4RL2
Genetics Home Reference (NIH)RTN4RL2
Genomic and cartography
GoldenPath hg38 (UCSC)RTN4RL2  -     chr11:57460537-57477539 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTN4RL2  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblRTN4RL2 - 11q12.1 [CytoView hg19]  RTN4RL2 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIRTN4RL2 [Mapview hg19]  RTN4RL2 [Mapview hg38]
OMIM610462   
Gene and transcription
Genbank (Entrez)AF532858 AX751514 AY250221 BC113673 BC117276
RefSeq transcript (Entrez)NM_178570
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RTN4RL2
Cluster EST : UnigeneHs.603388 [ NCBI ]
CGAP (NCI)Hs.603388
Alternative Splicing GalleryENSG00000186907
Gene ExpressionRTN4RL2 [ NCBI-GEO ]   RTN4RL2 [ EBI - ARRAY_EXPRESS ]   RTN4RL2 [ SEEK ]   RTN4RL2 [ MEM ]
Gene Expression Viewer (FireBrowse)RTN4RL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)349667
GTEX Portal (Tissue expression)RTN4RL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UN3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UN3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UN3
Splice isoforms : SwissVarQ86UN3
PhosPhoSitePlusQ86UN3
Domains : Interpro (EBI)Cys-rich_flank_reg_C    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  
Conserved Domain (NCBI)RTN4RL2
DMDM Disease mutations349667
Blocks (Seattle)RTN4RL2
SuperfamilyQ86UN3
Human Protein AtlasENSG00000186907
Peptide AtlasQ86UN3
HPRD11524
IPIIPI00328746   IPI00985424   IPI00787628   
Protein Interaction databases
DIP (DOE-UCLA)Q86UN3
IntAct (EBI)Q86UN3
FunCoupENSG00000186907
BioGRIDRTN4RL2
STRING (EMBL)RTN4RL2
ZODIACRTN4RL2
Ontologies - Pathways
QuickGOQ86UN3
Ontology : AmiGOprotein kinase inhibitor activity  receptor activity  extracellular region  cytoplasm  plasma membrane  negative regulation of protein kinase activity  C-terminal protein lipidation  cell surface receptor signaling pathway  external side of plasma membrane  cell surface  negative regulation of neuron projection development  cytokine-mediated signaling pathway  corpus callosum development  axon  dendrite  axon regeneration  neuron projection  perikaryon  membrane raft  negative regulation of JAK-STAT cascade  anchored component of plasma membrane  extracellular exosome  
Ontology : EGO-EBIprotein kinase inhibitor activity  receptor activity  extracellular region  cytoplasm  plasma membrane  negative regulation of protein kinase activity  C-terminal protein lipidation  cell surface receptor signaling pathway  external side of plasma membrane  cell surface  negative regulation of neuron projection development  cytokine-mediated signaling pathway  corpus callosum development  axon  dendrite  axon regeneration  neuron projection  perikaryon  membrane raft  negative regulation of JAK-STAT cascade  anchored component of plasma membrane  extracellular exosome  
NDEx NetworkRTN4RL2
Atlas of Cancer Signalling NetworkRTN4RL2
Wikipedia pathwaysRTN4RL2
Orthology - Evolution
OrthoDB349667
GeneTree (enSembl)ENSG00000186907
Phylogenetic Trees/Animal Genes : TreeFamRTN4RL2
HOVERGENQ86UN3
HOGENOMQ86UN3
Homologs : HomoloGeneRTN4RL2
Homology/Alignments : Family Browser (UCSC)RTN4RL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTN4RL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTN4RL2
dbVarRTN4RL2
ClinVarRTN4RL2
1000_GenomesRTN4RL2 
Exome Variant ServerRTN4RL2
ExAC (Exome Aggregation Consortium)RTN4RL2 (select the gene name)
Genetic variants : HAPMAP349667
Genomic Variants (DGV)RTN4RL2 [DGVbeta]
DECIPHERRTN4RL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRTN4RL2 
Mutations
ICGC Data PortalRTN4RL2 
TCGA Data PortalRTN4RL2 
Broad Tumor PortalRTN4RL2
OASIS PortalRTN4RL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRTN4RL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRTN4RL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RTN4RL2
DgiDB (Drug Gene Interaction Database)RTN4RL2
DoCM (Curated mutations)RTN4RL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTN4RL2 (select a term)
intoGenRTN4RL2
Cancer3DRTN4RL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610462   
Orphanet
MedgenRTN4RL2
Genetic Testing Registry RTN4RL2
NextProtQ86UN3 [Medical]
TSGene349667
GENETestsRTN4RL2
Target ValidationRTN4RL2
Huge Navigator RTN4RL2 [HugePedia]
snp3D : Map Gene to Disease349667
BioCentury BCIQRTN4RL2
ClinGenRTN4RL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD349667
Chemical/Pharm GKB GenePA134964131
Clinical trialRTN4RL2
Miscellaneous
canSAR (ICR)RTN4RL2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTN4RL2
EVEXRTN4RL2
GoPubMedRTN4RL2
iHOPRTN4RL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:39:40 CEST 2017

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