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RTP1 (receptor (chemosensory) transporter protein 1)

Identity

Alias_namesreceptor transporter protein 1
receptor (chemosensory) transporter protein 1
Alias_symbol (synonym)MGC35450
Z3CXXC1
Other alias
HGNC (Hugo) RTP1
LocusID (NCBI) 132112
Atlas_Id 52872
Location 3q27.3  [Link to chromosome band 3q27]
Location_base_pair Starts at 186915274 and ends at 186919253 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RTP1   28580
Cards
Entrez_Gene (NCBI)RTP1  132112  receptor (chemosensory) transporter protein 1
AliasesZ3CXXC1
GeneCards (Weizmann)RTP1
Ensembl hg19 (Hinxton)ENSG00000175077 [Gene_View]  chr3:186915274-186919253 [Contig_View]  RTP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000175077 [Gene_View]  chr3:186915274-186919253 [Contig_View]  RTP1 [Vega]
ICGC DataPortalENSG00000175077
TCGA cBioPortalRTP1
AceView (NCBI)RTP1
Genatlas (Paris)RTP1
WikiGenes132112
SOURCE (Princeton)RTP1
Genetics Home Reference (NIH)RTP1
Genomic and cartography
GoldenPath hg19 (UCSC)RTP1  -     chr3:186915274-186919253 +  3q27.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RTP1  -     3q27.3   [Description]    (hg38-Dec_2013)
EnsemblRTP1 - 3q27.3 [CytoView hg19]  RTP1 - 3q27.3 [CytoView hg38]
Mapping of homologs : NCBIRTP1 [Mapview hg19]  RTP1 [Mapview hg38]
OMIM609137   
Gene and transcription
Genbank (Entrez)AY562235 BC034744 BC065202 DQ890807 DQ893962
RefSeq transcript (Entrez)NM_153708
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)RTP1
Cluster EST : UnigeneHs.518480 [ NCBI ]
CGAP (NCI)Hs.518480
Alternative Splicing GalleryENSG00000175077
Gene ExpressionRTP1 [ NCBI-GEO ]   RTP1 [ EBI - ARRAY_EXPRESS ]   RTP1 [ SEEK ]   RTP1 [ MEM ]
Gene Expression Viewer (FireBrowse)RTP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132112
GTEX Portal (Tissue expression)RTP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59025   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59025  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59025
Splice isoforms : SwissVarP59025
PhosPhoSitePlusP59025
Domains : Interpro (EBI)R-trans_p    RTP1    Znf-3CxxC   
Domain families : Pfam (Sanger)zf-3CxxC (PF13695)   
Domain families : Pfam (NCBI)pfam13695   
Conserved Domain (NCBI)RTP1
DMDM Disease mutations132112
Blocks (Seattle)RTP1
SuperfamilyP59025
Human Protein AtlasENSG00000175077
Peptide AtlasP59025
HPRD16449
IPIIPI00168265   
Protein Interaction databases
DIP (DOE-UCLA)P59025
IntAct (EBI)P59025
FunCoupENSG00000175077
BioGRIDRTP1
STRING (EMBL)RTP1
ZODIACRTP1
Ontologies - Pathways
QuickGOP59025
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  intracellular  plasma membrane  protein targeting to membrane  cell surface  integral component of membrane  olfactory receptor binding  protein insertion into membrane  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  intracellular  plasma membrane  protein targeting to membrane  cell surface  integral component of membrane  olfactory receptor binding  protein insertion into membrane  
NDEx NetworkRTP1
Atlas of Cancer Signalling NetworkRTP1
Wikipedia pathwaysRTP1
Orthology - Evolution
OrthoDB132112
GeneTree (enSembl)ENSG00000175077
Phylogenetic Trees/Animal Genes : TreeFamRTP1
HOVERGENP59025
HOGENOMP59025
Homologs : HomoloGeneRTP1
Homology/Alignments : Family Browser (UCSC)RTP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTP1
dbVarRTP1
ClinVarRTP1
1000_GenomesRTP1 
Exome Variant ServerRTP1
ExAC (Exome Aggregation Consortium)RTP1 (select the gene name)
Genetic variants : HAPMAP132112
Genomic Variants (DGV)RTP1 [DGVbeta]
DECIPHER (Syndromes)3:186915274-186919253  ENSG00000175077
CONAN: Copy Number AnalysisRTP1 
Mutations
ICGC Data PortalRTP1 
TCGA Data PortalRTP1 
Broad Tumor PortalRTP1
OASIS PortalRTP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRTP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRTP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RTP1
DgiDB (Drug Gene Interaction Database)RTP1
DoCM (Curated mutations)RTP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTP1 (select a term)
intoGenRTP1
Cancer3DRTP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609137   
Orphanet
MedgenRTP1
Genetic Testing Registry RTP1
NextProtP59025 [Medical]
TSGene132112
GENETestsRTP1
Huge Navigator RTP1 [HugePedia]
snp3D : Map Gene to Disease132112
BioCentury BCIQRTP1
ClinGenRTP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132112
Chemical/Pharm GKB GenePA143485604
Clinical trialRTP1
Miscellaneous
canSAR (ICR)RTP1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTP1
EVEXRTP1
GoPubMedRTP1
iHOPRTP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:18:09 CEST 2017

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