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RTP2 (receptor (chemosensory) transporter protein 2)

Identity

Alias_namesreceptor transporter protein 2
receptor (chemosensory) transporter protein 2
Alias_symbol (synonym)MGC78665
Z3CXXC2
Other alias
HGNC (Hugo) RTP2
LocusID (NCBI) 344892
Atlas_Id 72928
Location 3q27.3  [Link to chromosome band 3q27]
Location_base_pair Starts at 187416047 and ends at 187420345 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RTP2   32486
Cards
Entrez_Gene (NCBI)RTP2  344892  receptor (chemosensory) transporter protein 2
AliasesZ3CXXC2
GeneCards (Weizmann)RTP2
Ensembl hg19 (Hinxton)ENSG00000198471 [Gene_View]  chr3:187416047-187420345 [Contig_View]  RTP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198471 [Gene_View]  chr3:187416047-187420345 [Contig_View]  RTP2 [Vega]
ICGC DataPortalENSG00000198471
TCGA cBioPortalRTP2
AceView (NCBI)RTP2
Genatlas (Paris)RTP2
WikiGenes344892
SOURCE (Princeton)RTP2
Genetics Home Reference (NIH)RTP2
Genomic and cartography
GoldenPath hg19 (UCSC)RTP2  -     chr3:187416047-187420345 -  3q27.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RTP2  -     3q27.3   [Description]    (hg38-Dec_2013)
EnsemblRTP2 - 3q27.3 [CytoView hg19]  RTP2 - 3q27.3 [CytoView hg38]
Mapping of homologs : NCBIRTP2 [Mapview hg19]  RTP2 [Mapview hg38]
OMIM609138   
Gene and transcription
Genbank (Entrez)AY562236 BC068081 HQ447529
RefSeq transcript (Entrez)NM_001004312
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)RTP2
Cluster EST : UnigeneHs.567872 [ NCBI ]
CGAP (NCI)Hs.567872
Alternative Splicing GalleryENSG00000198471
Gene ExpressionRTP2 [ NCBI-GEO ]   RTP2 [ EBI - ARRAY_EXPRESS ]   RTP2 [ SEEK ]   RTP2 [ MEM ]
Gene Expression Viewer (FireBrowse)RTP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)344892
GTEX Portal (Tissue expression)RTP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5QGT7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5QGT7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5QGT7
Splice isoforms : SwissVarQ5QGT7
PhosPhoSitePlusQ5QGT7
Domains : Interpro (EBI)R-trans_p/CXXC11    Znf-3CxxC   
Domain families : Pfam (Sanger)zf-3CxxC (PF13695)   
Domain families : Pfam (NCBI)pfam13695   
Conserved Domain (NCBI)RTP2
DMDM Disease mutations344892
Blocks (Seattle)RTP2
SuperfamilyQ5QGT7
Human Protein AtlasENSG00000198471
Peptide AtlasQ5QGT7
HPRD12371
IPIIPI00419776   
Protein Interaction databases
DIP (DOE-UCLA)Q5QGT7
IntAct (EBI)Q5QGT7
FunCoupENSG00000198471
BioGRIDRTP2
STRING (EMBL)RTP2
ZODIACRTP2
Ontologies - Pathways
QuickGOQ5QGT7
Ontology : AmiGOprotein binding  plasma membrane  cell surface  integral component of membrane  olfactory receptor binding  protein insertion into membrane  
Ontology : EGO-EBIprotein binding  plasma membrane  cell surface  integral component of membrane  olfactory receptor binding  protein insertion into membrane  
NDEx NetworkRTP2
Atlas of Cancer Signalling NetworkRTP2
Wikipedia pathwaysRTP2
Orthology - Evolution
OrthoDB344892
GeneTree (enSembl)ENSG00000198471
Phylogenetic Trees/Animal Genes : TreeFamRTP2
HOVERGENQ5QGT7
HOGENOMQ5QGT7
Homologs : HomoloGeneRTP2
Homology/Alignments : Family Browser (UCSC)RTP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTP2
dbVarRTP2
ClinVarRTP2
1000_GenomesRTP2 
Exome Variant ServerRTP2
ExAC (Exome Aggregation Consortium)RTP2 (select the gene name)
Genetic variants : HAPMAP344892
Genomic Variants (DGV)RTP2 [DGVbeta]
DECIPHER (Syndromes)3:187416047-187420345  ENSG00000198471
CONAN: Copy Number AnalysisRTP2 
Mutations
ICGC Data PortalRTP2 
TCGA Data PortalRTP2 
Broad Tumor PortalRTP2
OASIS PortalRTP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRTP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRTP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RTP2
DgiDB (Drug Gene Interaction Database)RTP2
DoCM (Curated mutations)RTP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTP2 (select a term)
intoGenRTP2
Cancer3DRTP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609138   
Orphanet
MedgenRTP2
Genetic Testing Registry RTP2
NextProtQ5QGT7 [Medical]
TSGene344892
GENETestsRTP2
Huge Navigator RTP2 [HugePedia]
snp3D : Map Gene to Disease344892
BioCentury BCIQRTP2
ClinGenRTP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD344892
Chemical/Pharm GKB GenePA143485605
Clinical trialRTP2
Miscellaneous
canSAR (ICR)RTP2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTP2
EVEXRTP2
GoPubMedRTP2
iHOPRTP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:07 CET 2017

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