Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RTP3 (receptor transporter protein 3)

Identity

Alias (NCBI)LTM1
TMEM7
Z3CXXC3
HGNC (Hugo) RTP3
HGNC Alias symbLTM1
Z3CXXC3
HGNC Alias namezinc finger, 3CxxC-type 3
HGNC Previous nameTMEM7
HGNC Previous nameTMEM7
LocusID (NCBI) 83597
Atlas_Id 49796
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 46497976 and ends at 46500950 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RTP3   15572
Cards
Entrez_Gene (NCBI)RTP3    receptor transporter protein 3
AliasesLTM1; TMEM7; Z3CXXC3
GeneCards (Weizmann)RTP3
Ensembl hg19 (Hinxton)ENSG00000163825 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163825 [Gene_View]  ENSG00000163825 [Sequence]  chr3:46497976-46500950 [Contig_View]  RTP3 [Vega]
ICGC DataPortalENSG00000163825
TCGA cBioPortalRTP3
AceView (NCBI)RTP3
Genatlas (Paris)RTP3
SOURCE (Princeton)RTP3
Genetics Home Reference (NIH)RTP3
Genomic and cartography
GoldenPath hg38 (UCSC)RTP3  -     chr3:46497976-46500950 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTP3  -     3p21.31   [Description]    (hg19-Feb_2009)
GoldenPathRTP3 - 3p21.31 [CytoView hg19]  RTP3 - 3p21.31 [CytoView hg38]
ImmunoBaseENSG00000163825
Genome Data Viewer NCBIRTP3 [Mapview hg19]  
OMIM607181   
Gene and transcription
Genbank (Entrez)AJ312776 AY562237 BC131756
RefSeq transcript (Entrez)NM_031440
Consensus coding sequences : CCDS (NCBI)RTP3
Gene ExpressionRTP3 [ NCBI-GEO ]   RTP3 [ EBI - ARRAY_EXPRESS ]   RTP3 [ SEEK ]   RTP3 [ MEM ]
Gene Expression Viewer (FireBrowse)RTP3 [ Firebrowse - Broad ]
GenevisibleExpression of RTP3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83597
GTEX Portal (Tissue expression)RTP3
Human Protein AtlasENSG00000163825-RTP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQQ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQQ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQQ7
PhosPhoSitePlusQ9BQQ7
Domains : Interpro (EBI)R-trans_p    RTP3    Znf-3CxxC   
Domain families : Pfam (Sanger)zf-3CxxC (PF13695)   
Domain families : Pfam (NCBI)pfam13695   
Domain families : Smart (EMBL)zf-3CxxC (SM01328)  
Conserved Domain (NCBI)RTP3
SuperfamilyQ9BQQ7
AlphaFold pdb e-kbQ9BQQ7   
Human Protein Atlas [tissue]ENSG00000163825-RTP3 [tissue]
HPRD06214
Protein Interaction databases
DIP (DOE-UCLA)Q9BQQ7
IntAct (EBI)Q9BQQ7
BioGRIDRTP3
STRING (EMBL)RTP3
ZODIACRTP3
Ontologies - Pathways
QuickGOQ9BQQ7
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  detection of chemical stimulus involved in sensory perception of bitter taste  protein binding  cytoplasm  cytoplasm  protein targeting to membrane  protein targeting to membrane  integral component of membrane  olfactory receptor binding  protein insertion into membrane  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  detection of chemical stimulus involved in sensory perception of bitter taste  protein binding  cytoplasm  cytoplasm  protein targeting to membrane  protein targeting to membrane  integral component of membrane  olfactory receptor binding  protein insertion into membrane  
NDEx NetworkRTP3
Atlas of Cancer Signalling NetworkRTP3
Wikipedia pathwaysRTP3
Orthology - Evolution
OrthoDB83597
GeneTree (enSembl)ENSG00000163825
Phylogenetic Trees/Animal Genes : TreeFamRTP3
Homologs : HomoloGeneRTP3
Homology/Alignments : Family Browser (UCSC)RTP3
Gene fusions - Rearrangements
Fusion : QuiverRTP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTP3
dbVarRTP3
ClinVarRTP3
MonarchRTP3
1000_GenomesRTP3 
Exome Variant ServerRTP3
GNOMAD BrowserENSG00000163825
Varsome BrowserRTP3
ACMGRTP3 variants
VarityQ9BQQ7
Genomic Variants (DGV)RTP3 [DGVbeta]
DECIPHERRTP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRTP3 
Mutations
ICGC Data PortalRTP3 
TCGA Data PortalRTP3 
Broad Tumor PortalRTP3
OASIS PortalRTP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRTP3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRTP3
Mutations and Diseases : HGMDRTP3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRTP3
DgiDB (Drug Gene Interaction Database)RTP3
DoCM (Curated mutations)RTP3
CIViC (Clinical Interpretations of Variants in Cancer)RTP3
Cancer3DRTP3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607181   
Orphanet
DisGeNETRTP3
MedgenRTP3
Genetic Testing Registry RTP3
NextProtQ9BQQ7 [Medical]
GENETestsRTP3
Target ValidationRTP3
Huge Navigator RTP3 [HugePedia]
ClinGenRTP3
Clinical trials, drugs, therapy
MyCancerGenomeRTP3
Protein Interactions : CTDRTP3
Pharm GKB GenePA37981
PharosQ9BQQ7
Clinical trialRTP3
Miscellaneous
canSAR (ICR)RTP3
HarmonizomeRTP3
DataMed IndexRTP3
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRTP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:29:50 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.