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RTP3 (receptor transporter protein 3)

Identity

Alias_names3CxxC-type 3
TMEM7
Alias_symbol (synonym)LTM1
Z3CXXC3
Other alias
HGNC (Hugo) RTP3
LocusID (NCBI) 83597
Atlas_Id 49796
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 46497995 and ends at 46500949 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RTP3   15572
Cards
Entrez_Gene (NCBI)RTP3  83597  receptor transporter protein 3
AliasesLTM1; TMEM7; Z3CXXC3
GeneCards (Weizmann)RTP3
Ensembl hg19 (Hinxton)ENSG00000163825 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163825 [Gene_View]  chr3:46497995-46500949 [Contig_View]  RTP3 [Vega]
ICGC DataPortalENSG00000163825
TCGA cBioPortalRTP3
AceView (NCBI)RTP3
Genatlas (Paris)RTP3
WikiGenes83597
SOURCE (Princeton)RTP3
Genetics Home Reference (NIH)RTP3
Genomic and cartography
GoldenPath hg38 (UCSC)RTP3  -     chr3:46497995-46500949 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTP3  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblRTP3 - 3p21.31 [CytoView hg19]  RTP3 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIRTP3 [Mapview hg19]  RTP3 [Mapview hg38]
OMIM607181   
Gene and transcription
Genbank (Entrez)AJ312776 AY562237 BC131756
RefSeq transcript (Entrez)NM_031440
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RTP3
Cluster EST : UnigeneHs.196584 [ NCBI ]
CGAP (NCI)Hs.196584
Alternative Splicing GalleryENSG00000163825
Gene ExpressionRTP3 [ NCBI-GEO ]   RTP3 [ EBI - ARRAY_EXPRESS ]   RTP3 [ SEEK ]   RTP3 [ MEM ]
Gene Expression Viewer (FireBrowse)RTP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83597
GTEX Portal (Tissue expression)RTP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQQ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQQ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQQ7
Splice isoforms : SwissVarQ9BQQ7
PhosPhoSitePlusQ9BQQ7
Domains : Interpro (EBI)R-trans_p    RTP3    Znf-3CxxC   
Domain families : Pfam (Sanger)zf-3CxxC (PF13695)   
Domain families : Pfam (NCBI)pfam13695   
Domain families : Smart (EMBL)zf-3CxxC (SM01328)  
Conserved Domain (NCBI)RTP3
DMDM Disease mutations83597
Blocks (Seattle)RTP3
SuperfamilyQ9BQQ7
Human Protein AtlasENSG00000163825
Peptide AtlasQ9BQQ7
HPRD06214
IPIIPI00027781   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQQ7
IntAct (EBI)Q9BQQ7
FunCoupENSG00000163825
BioGRIDRTP3
STRING (EMBL)RTP3
ZODIACRTP3
Ontologies - Pathways
QuickGOQ9BQQ7
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  protein binding  cytoplasm  protein targeting to membrane  cell surface  integral component of membrane  olfactory receptor binding  protein insertion into membrane  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  protein binding  cytoplasm  protein targeting to membrane  cell surface  integral component of membrane  olfactory receptor binding  protein insertion into membrane  
NDEx NetworkRTP3
Atlas of Cancer Signalling NetworkRTP3
Wikipedia pathwaysRTP3
Orthology - Evolution
OrthoDB83597
GeneTree (enSembl)ENSG00000163825
Phylogenetic Trees/Animal Genes : TreeFamRTP3
HOVERGENQ9BQQ7
HOGENOMQ9BQQ7
Homologs : HomoloGeneRTP3
Homology/Alignments : Family Browser (UCSC)RTP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTP3
dbVarRTP3
ClinVarRTP3
1000_GenomesRTP3 
Exome Variant ServerRTP3
ExAC (Exome Aggregation Consortium)RTP3 (select the gene name)
Genetic variants : HAPMAP83597
Genomic Variants (DGV)RTP3 [DGVbeta]
DECIPHERRTP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRTP3 
Mutations
ICGC Data PortalRTP3 
TCGA Data PortalRTP3 
Broad Tumor PortalRTP3
OASIS PortalRTP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRTP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRTP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RTP3
DgiDB (Drug Gene Interaction Database)RTP3
DoCM (Curated mutations)RTP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTP3 (select a term)
intoGenRTP3
Cancer3DRTP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607181   
Orphanet
MedgenRTP3
Genetic Testing Registry RTP3
NextProtQ9BQQ7 [Medical]
TSGene83597
GENETestsRTP3
Target ValidationRTP3
Huge Navigator RTP3 [HugePedia]
snp3D : Map Gene to Disease83597
BioCentury BCIQRTP3
ClinGenRTP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83597
Chemical/Pharm GKB GenePA37981
Clinical trialRTP3
Miscellaneous
canSAR (ICR)RTP3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTP3
EVEXRTP3
GoPubMedRTP3
iHOPRTP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:54:09 CEST 2017

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