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RTP4 (receptor transporter protein 4)

Identity

Alias_namesreceptor transporter protein 4
receptor (chemosensory) transporter protein 4
Alias_symbol (synonym)IFRG28
Z3CXXC4
Other alias
HGNC (Hugo) RTP4
LocusID (NCBI) 64108
Atlas_Id 72929
Location 3q27.3  [Link to chromosome band 3q27]
Location_base_pair Starts at 187368380 and ends at 187371581 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RTP4   23992
Cards
Entrez_Gene (NCBI)RTP4  64108  receptor transporter protein 4
AliasesIFRG28; Z3CXXC4
GeneCards (Weizmann)RTP4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:187368380-187371581 [Contig_View]  RTP4 [Vega]
TCGA cBioPortalRTP4
AceView (NCBI)RTP4
Genatlas (Paris)RTP4
WikiGenes64108
SOURCE (Princeton)RTP4
Genetics Home Reference (NIH)RTP4
Genomic and cartography
GoldenPath hg38 (UCSC)RTP4  -     chr3:187368380-187371581 +  3q27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTP4  -     3q27.3   [Description]    (hg19-Feb_2009)
EnsemblRTP4 - 3q27.3 [CytoView hg19]  RTP4 - 3q27.3 [CytoView hg38]
Mapping of homologs : NCBIRTP4 [Mapview hg19]  RTP4 [Mapview hg38]
OMIM609350   
Gene and transcription
Genbank (Entrez)AJ251832 AY562238 BC013161 CA413859 DQ891046
RefSeq transcript (Entrez)NM_022147
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RTP4
Cluster EST : UnigeneHs.43388 [ NCBI ]
CGAP (NCI)Hs.43388
Gene ExpressionRTP4 [ NCBI-GEO ]   RTP4 [ EBI - ARRAY_EXPRESS ]   RTP4 [ SEEK ]   RTP4 [ MEM ]
Gene Expression Viewer (FireBrowse)RTP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64108
GTEX Portal (Tissue expression)RTP4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DX8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DX8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DX8
Splice isoforms : SwissVarQ96DX8
PhosPhoSitePlusQ96DX8
Domains : Interpro (EBI)R-trans_p    RTP4    Znf-3CxxC   
Domain families : Pfam (Sanger)zf-3CxxC (PF13695)   
Domain families : Pfam (NCBI)pfam13695   
Domain families : Smart (EMBL)zf-3CxxC (SM01328)  
Conserved Domain (NCBI)RTP4
DMDM Disease mutations64108
Blocks (Seattle)RTP4
SuperfamilyQ96DX8
Peptide AtlasQ96DX8
HPRD17136
IPIIPI00304691   
Protein Interaction databases
DIP (DOE-UCLA)Q96DX8
IntAct (EBI)Q96DX8
BioGRIDRTP4
STRING (EMBL)RTP4
ZODIACRTP4
Ontologies - Pathways
QuickGOQ96DX8
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  protein binding  cytoplasm  protein targeting to membrane  cell surface  integral component of membrane  olfactory receptor binding  protein insertion into membrane  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  protein binding  cytoplasm  protein targeting to membrane  cell surface  integral component of membrane  olfactory receptor binding  protein insertion into membrane  
NDEx NetworkRTP4
Atlas of Cancer Signalling NetworkRTP4
Wikipedia pathwaysRTP4
Orthology - Evolution
OrthoDB64108
Phylogenetic Trees/Animal Genes : TreeFamRTP4
HOVERGENQ96DX8
HOGENOMQ96DX8
Homologs : HomoloGeneRTP4
Homology/Alignments : Family Browser (UCSC)RTP4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTP4
dbVarRTP4
ClinVarRTP4
1000_GenomesRTP4 
Exome Variant ServerRTP4
ExAC (Exome Aggregation Consortium)RTP4 (select the gene name)
Genetic variants : HAPMAP64108
Genomic Variants (DGV)RTP4 [DGVbeta]
DECIPHERRTP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRTP4 
Mutations
ICGC Data PortalRTP4 
TCGA Data PortalRTP4 
Broad Tumor PortalRTP4
OASIS PortalRTP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRTP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRTP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RTP4
DgiDB (Drug Gene Interaction Database)RTP4
DoCM (Curated mutations)RTP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTP4 (select a term)
intoGenRTP4
Cancer3DRTP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609350   
Orphanet
MedgenRTP4
Genetic Testing Registry RTP4
NextProtQ96DX8 [Medical]
TSGene64108
GENETestsRTP4
Target ValidationRTP4
Huge Navigator RTP4 [HugePedia]
snp3D : Map Gene to Disease64108
BioCentury BCIQRTP4
ClinGenRTP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64108
Chemical/Pharm GKB GenePA143485606
Clinical trialRTP4
Miscellaneous
canSAR (ICR)RTP4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTP4
EVEXRTP4
GoPubMedRTP4
iHOPRTP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:41 CEST 2017

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