Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RTP5 (receptor transporter protein 5 (putative))

Identity

Alias_namesC2orf85
CXXC11
chromosome 2 open reading frame 85
CXXC finger protein 11
receptor (chemosensory) transporter protein 5 (putative)
Alias_symbol (synonym)FLJ33590
Z3CXXC5
Other alias
HGNC (Hugo) RTP5
LocusID (NCBI) 285093
Atlas_Id 72930
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 241869734 and ends at 241873330 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RTP5   26585
Cards
Entrez_Gene (NCBI)RTP5  285093  receptor transporter protein 5 (putative)
AliasesC2orf85; CXXC11; Z3CXXC5
GeneCards (Weizmann)RTP5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:241869734-241873330 [Contig_View]  RTP5 [Vega]
TCGA cBioPortalRTP5
AceView (NCBI)RTP5
Genatlas (Paris)RTP5
WikiGenes285093
SOURCE (Princeton)RTP5
Genetics Home Reference (NIH)RTP5
Genomic and cartography
GoldenPath hg38 (UCSC)RTP5  -     chr2:241869734-241873330 +  2q37.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTP5  -     2q37.3   [Description]    (hg19-Feb_2009)
EnsemblRTP5 - 2q37.3 [CytoView hg19]  RTP5 - 2q37.3 [CytoView hg38]
Mapping of homologs : NCBIRTP5 [Mapview hg19]  RTP5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090909 BC113517 BC113519
RefSeq transcript (Entrez)NM_173821
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_187527
Consensus coding sequences : CCDS (NCBI)RTP5
Cluster EST : UnigeneHs.376307 [ NCBI ]
CGAP (NCI)Hs.376307
Gene ExpressionRTP5 [ NCBI-GEO ]   RTP5 [ EBI - ARRAY_EXPRESS ]   RTP5 [ SEEK ]   RTP5 [ MEM ]
Gene Expression Viewer (FireBrowse)RTP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285093
GTEX Portal (Tissue expression)RTP5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14D33   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14D33  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14D33
Splice isoforms : SwissVarQ14D33
PhosPhoSitePlusQ14D33
Domains : Interpro (EBI)CXXC11    R-trans_p    Znf-3CxxC   
Domain families : Pfam (Sanger)zf-3CxxC (PF13695)   
Domain families : Pfam (NCBI)pfam13695   
Domain families : Smart (EMBL)zf-3CxxC (SM01328)  
Conserved Domain (NCBI)RTP5
DMDM Disease mutations285093
Blocks (Seattle)RTP5
SuperfamilyQ14D33
Peptide AtlasQ14D33
HPRD08159
IPIIPI00787126   IPI00166361   
Protein Interaction databases
DIP (DOE-UCLA)Q14D33
IntAct (EBI)Q14D33
BioGRIDRTP5
STRING (EMBL)RTP5
ZODIACRTP5
Ontologies - Pathways
QuickGOQ14D33
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  protein binding  intracellular  protein targeting to membrane  cell surface  integral component of membrane  olfactory receptor binding  protein insertion into membrane  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  protein binding  intracellular  protein targeting to membrane  cell surface  integral component of membrane  olfactory receptor binding  protein insertion into membrane  
NDEx NetworkRTP5
Atlas of Cancer Signalling NetworkRTP5
Wikipedia pathwaysRTP5
Orthology - Evolution
OrthoDB285093
Phylogenetic Trees/Animal Genes : TreeFamRTP5
HOVERGENQ14D33
HOGENOMQ14D33
Homologs : HomoloGeneRTP5
Homology/Alignments : Family Browser (UCSC)RTP5
Gene fusions - Rearrangements
Tumor Fusion PortalRTP5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTP5
dbVarRTP5
ClinVarRTP5
1000_GenomesRTP5 
Exome Variant ServerRTP5
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP285093
Genomic Variants (DGV)RTP5 [DGVbeta]
DECIPHERRTP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRTP5 
Mutations
ICGC Data PortalRTP5 
TCGA Data PortalRTP5 
Broad Tumor PortalRTP5
OASIS PortalRTP5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRTP5
BioMutasearch RTP5
DgiDB (Drug Gene Interaction Database)RTP5
DoCM (Curated mutations)RTP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTP5 (select a term)
intoGenRTP5
Cancer3DRTP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRTP5
MedgenRTP5
Genetic Testing Registry RTP5
NextProtQ14D33 [Medical]
TSGene285093
GENETestsRTP5
Target ValidationRTP5
Huge Navigator RTP5 [HugePedia]
snp3D : Map Gene to Disease285093
BioCentury BCIQRTP5
ClinGenRTP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285093
Chemical/Pharm GKB GenePA164717177
Clinical trialRTP5
Miscellaneous
canSAR (ICR)RTP5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTP5
EVEXRTP5
GoPubMedRTP5
iHOPRTP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:11:00 CET 2017

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