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RTRAF (RNA transcription, translation and transport factor)

Identity

Other aliasC14orf166
CGI-99
CGI99
CLE
CLE7
LCRP369
RLLM1
hCLE
hCLE1
HGNC (Hugo) RTRAF
LocusID (NCBI) 51637
Atlas_Id 57165
Location 14q22.1  [Link to chromosome band 14q22]
Location_base_pair Starts at 51989510 and ends at 52004702 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)RTRAF   23169
Cards
Entrez_Gene (NCBI)RTRAF  51637  RNA transcription, translation and transport factor
AliasesC14orf166; CGI-99; CGI99; CLE; 
CLE7; LCRP369; RLLM1; hCLE; hCLE1
GeneCards (Weizmann)RTRAF
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr14:51989510-52004702 [Contig_View]  RTRAF [Vega]
TCGA cBioPortalRTRAF
AceView (NCBI)RTRAF
Genatlas (Paris)RTRAF
WikiGenes51637
SOURCE (Princeton)RTRAF
Genetics Home Reference (NIH)RTRAF
Genomic and cartography
GoldenPath hg38 (UCSC)RTRAF  -     chr14:51989510-52004702 +  14q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RTRAF  -     14q22.1   [Description]    (hg19-Feb_2009)
EnsemblRTRAF - 14q22.1 [CytoView hg19]  RTRAF - 14q22.1 [CytoView hg38]
Mapping of homologs : NCBIRTRAF [Mapview hg19]  RTRAF [Mapview hg38]
OMIM610858   
Gene and transcription
Genbank (Entrez)AF087877 AF100755 AF151857 AK312004 AY817175
RefSeq transcript (Entrez)NM_016039
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RTRAF
Cluster EST : UnigeneHs.534457 [ NCBI ]
CGAP (NCI)Hs.534457
Gene ExpressionRTRAF [ NCBI-GEO ]   RTRAF [ EBI - ARRAY_EXPRESS ]   RTRAF [ SEEK ]   RTRAF [ MEM ]
Gene Expression Viewer (FireBrowse)RTRAF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51637
GTEX Portal (Tissue expression)RTRAF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y224   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y224  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y224
Splice isoforms : SwissVarQ9Y224
PhosPhoSitePlusQ9Y224
Domains : Interpro (EBI)RTRAF   
Domain families : Pfam (Sanger)RLL (PF10036)   
Domain families : Pfam (NCBI)pfam10036   
Conserved Domain (NCBI)RTRAF
DMDM Disease mutations51637
Blocks (Seattle)RTRAF
SuperfamilyQ9Y224
Peptide AtlasQ9Y224
IPIIPI00006980   IPI01026113   IPI01026016   IPI01026327   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y224
IntAct (EBI)Q9Y224
BioGRIDRTRAF
STRING (EMBL)RTRAF
ZODIACRTRAF
Ontologies - Pathways
QuickGOQ9Y224
Ontology : AmiGORNA polymerase II core binding  RNA binding  RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  centrosome  cytosol  transcription, DNA-templated  tRNA splicing, via endonucleolytic cleavage and ligation  negative regulation of protein kinase activity  viral process  identical protein binding  positive regulation of transcription by RNA polymerase II  perinuclear region of cytoplasm  RNA transport  tRNA-splicing ligase complex  mitotic spindle  
Ontology : EGO-EBIRNA polymerase II core binding  RNA binding  RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  centrosome  cytosol  transcription, DNA-templated  tRNA splicing, via endonucleolytic cleavage and ligation  negative regulation of protein kinase activity  viral process  identical protein binding  positive regulation of transcription by RNA polymerase II  perinuclear region of cytoplasm  RNA transport  tRNA-splicing ligase complex  mitotic spindle  
NDEx NetworkRTRAF
Atlas of Cancer Signalling NetworkRTRAF
Wikipedia pathwaysRTRAF
Orthology - Evolution
OrthoDB51637
Phylogenetic Trees/Animal Genes : TreeFamRTRAF
HOVERGENQ9Y224
HOGENOMQ9Y224
Homologs : HomoloGeneRTRAF
Homology/Alignments : Family Browser (UCSC)RTRAF
Gene fusions - Rearrangements
Fusion : QuiverRTRAF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTRAF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTRAF
dbVarRTRAF
ClinVarRTRAF
1000_GenomesRTRAF 
Exome Variant ServerRTRAF
Varsome BrowserRTRAF
Genetic variants : HAPMAP51637
Genomic Variants (DGV)RTRAF [DGVbeta]
DECIPHERRTRAF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRTRAF 
Mutations
ICGC Data PortalRTRAF 
TCGA Data PortalRTRAF 
Broad Tumor PortalRTRAF
OASIS PortalRTRAF [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRTRAF
BioMutasearch RTRAF
DgiDB (Drug Gene Interaction Database)RTRAF
DoCM (Curated mutations)RTRAF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTRAF (select a term)
intoGenRTRAF
Cancer3DRTRAF(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610858   
Orphanet
DisGeNETRTRAF
MedgenRTRAF
Genetic Testing Registry RTRAF
NextProtQ9Y224 [Medical]
TSGene51637
GENETestsRTRAF
Target ValidationRTRAF
Huge Navigator RTRAF [HugePedia]
snp3D : Map Gene to Disease51637
BioCentury BCIQRTRAF
ClinGenRTRAF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51637
Chemical/Pharm GKB GenePA134953268
Clinical trialRTRAF
Miscellaneous
canSAR (ICR)RTRAF (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTRAF
EVEXRTRAF
GoPubMedRTRAF
iHOPRTRAF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:50:24 CEST 2018

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