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RTTN (rotatin)

Identity

Alias_symbol (synonym)DKFZP434G145
Other alias-
HGNC (Hugo) RTTN
LocusID (NCBI) 25914
Atlas_Id 72931
Location 18q22.2  [Link to chromosome band 18q22]
Location_base_pair Starts at 67671043 and ends at 67872962 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DIP2B (12q13.12) / RTTN (18q22.2)RTTN (18q22.2) / MAPK4 (18q21.1)RTTN (18q22.2) / PKP2 (12p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RTTN   18654
Cards
Entrez_Gene (NCBI)RTTN  25914  rotatin
Aliases
GeneCards (Weizmann)RTTN
Ensembl hg19 (Hinxton)ENSG00000176225 [Gene_View]  chr18:67671043-67872962 [Contig_View]  RTTN [Vega]
Ensembl hg38 (Hinxton)ENSG00000176225 [Gene_View]  chr18:67671043-67872962 [Contig_View]  RTTN [Vega]
ICGC DataPortalENSG00000176225
TCGA cBioPortalRTTN
AceView (NCBI)RTTN
Genatlas (Paris)RTTN
WikiGenes25914
SOURCE (Princeton)RTTN
Genetics Home Reference (NIH)RTTN
Genomic and cartography
GoldenPath hg19 (UCSC)RTTN  -     chr18:67671043-67872962 -  18q22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RTTN  -     18q22.2   [Description]    (hg38-Dec_2013)
EnsemblRTTN - 18q22.2 [CytoView hg19]  RTTN - 18q22.2 [CytoView hg38]
Mapping of homologs : NCBIRTTN [Mapview hg19]  RTTN [Mapview hg38]
OMIM610436   614833   
Gene and transcription
Genbank (Entrez)AK096404 AK126538 AK128137 AK129866 AL117635
RefSeq transcript (Entrez)NM_173630
RefSeq genomic (Entrez)NC_000018 NC_018929 NG_033104 NT_010966 NW_004929411
Consensus coding sequences : CCDS (NCBI)RTTN
Cluster EST : UnigeneHs.654809 [ NCBI ]
CGAP (NCI)Hs.654809
Alternative Splicing GalleryENSG00000176225
Gene ExpressionRTTN [ NCBI-GEO ]   RTTN [ EBI - ARRAY_EXPRESS ]   RTTN [ SEEK ]   RTTN [ MEM ]
Gene Expression Viewer (FireBrowse)RTTN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25914
GTEX Portal (Tissue expression)RTTN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VV8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VV8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VV8
Splice isoforms : SwissVarQ86VV8
PhosPhoSitePlusQ86VV8
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Rotatin    Rotatin_N   
Domain families : Pfam (Sanger)RTTN_N (PF14726)   
Domain families : Pfam (NCBI)pfam14726   
Conserved Domain (NCBI)RTTN
DMDM Disease mutations25914
Blocks (Seattle)RTTN
SuperfamilyQ86VV8
Human Protein AtlasENSG00000176225
Peptide AtlasQ86VV8
HPRD11525
IPIIPI00645947   IPI00869330   IPI00647076   IPI00869048   IPI00869092   IPI00952915   
Protein Interaction databases
DIP (DOE-UCLA)Q86VV8
IntAct (EBI)Q86VV8
FunCoupENSG00000176225
BioGRIDRTTN
STRING (EMBL)RTTN
ZODIACRTTN
Ontologies - Pathways
QuickGOQ86VV8
Ontology : AmiGOcytoplasm  centrosome  determination of left/right symmetry  ciliary basal body  cilium organization  
Ontology : EGO-EBIcytoplasm  centrosome  determination of left/right symmetry  ciliary basal body  cilium organization  
NDEx NetworkRTTN
Atlas of Cancer Signalling NetworkRTTN
Wikipedia pathwaysRTTN
Orthology - Evolution
OrthoDB25914
GeneTree (enSembl)ENSG00000176225
Phylogenetic Trees/Animal Genes : TreeFamRTTN
HOVERGENQ86VV8
HOGENOMQ86VV8
Homologs : HomoloGeneRTTN
Homology/Alignments : Family Browser (UCSC)RTTN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRTTN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RTTN
dbVarRTTN
ClinVarRTTN
1000_GenomesRTTN 
Exome Variant ServerRTTN
ExAC (Exome Aggregation Consortium)RTTN (select the gene name)
Genetic variants : HAPMAP25914
Genomic Variants (DGV)RTTN [DGVbeta]
DECIPHER (Syndromes)18:67671043-67872962  ENSG00000176225
CONAN: Copy Number AnalysisRTTN 
Mutations
ICGC Data PortalRTTN 
TCGA Data PortalRTTN 
Broad Tumor PortalRTTN
OASIS PortalRTTN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRTTN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRTTN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RTTN
DgiDB (Drug Gene Interaction Database)RTTN
DoCM (Curated mutations)RTTN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RTTN (select a term)
intoGenRTTN
Cancer3DRTTN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610436    614833   
Orphanet18606   
MedgenRTTN
Genetic Testing Registry RTTN
NextProtQ86VV8 [Medical]
TSGene25914
GENETestsRTTN
Huge Navigator RTTN [HugePedia]
snp3D : Map Gene to Disease25914
BioCentury BCIQRTTN
ClinGenRTTN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25914
Chemical/Pharm GKB GenePA38622
Clinical trialRTTN
Miscellaneous
canSAR (ICR)RTTN (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRTTN
EVEXRTTN
GoPubMedRTTN
iHOPRTTN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:08 CET 2017

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