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RUBCN (RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein)

Identity

Alias_namesKIAA0226
KIAA0226
RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein
Alias_symbol (synonym)rubicon
rundataxin
Other aliasRUBICON
SCAR15
HGNC (Hugo) RUBCN
LocusID (NCBI) 9711
Atlas_Id 77965
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 197398265 and ends at 197476570 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DOCK4 (7q31.1) / RUBCN (3q29)RUBCN (3q29) / S100B (21q22.3)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)RUBCN   28991
LRG (Locus Reference Genomic)LRG_1093
Cards
Entrez_Gene (NCBI)RUBCN  9711  RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein
AliasesKIAA0226; RUBICON; SCAR15
GeneCards (Weizmann)RUBCN
Ensembl hg19 (Hinxton)ENSG00000145016 [Gene_View]  chr3:197398265-197476570 [Contig_View]  RUBCN [Vega]
Ensembl hg38 (Hinxton)ENSG00000145016 [Gene_View]  chr3:197398265-197476570 [Contig_View]  RUBCN [Vega]
ICGC DataPortalENSG00000145016
TCGA cBioPortalRUBCN
AceView (NCBI)RUBCN
Genatlas (Paris)RUBCN
WikiGenes9711
SOURCE (Princeton)RUBCN
Genetics Home Reference (NIH)RUBCN
Genomic and cartography
GoldenPath hg19 (UCSC)RUBCN  -     chr3:197398265-197476570 -  3q29   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RUBCN  -     3q29   [Description]    (hg38-Dec_2013)
EnsemblRUBCN - 3q29 [CytoView hg19]  RUBCN - 3q29 [CytoView hg38]
Mapping of homologs : NCBIRUBCN [Mapview hg19]  RUBCN [Mapview hg38]
OMIM613516   615705   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001145642 NM_014687
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_034153 NT_005612 NW_004929312
Consensus coding sequences : CCDS (NCBI)RUBCN
Cluster EST : UnigeneHs.478868 [ NCBI ]
CGAP (NCI)Hs.478868
Alternative Splicing GalleryENSG00000145016
Gene ExpressionRUBCN [ NCBI-GEO ]   RUBCN [ EBI - ARRAY_EXPRESS ]   RUBCN [ SEEK ]   RUBCN [ MEM ]
Gene Expression Viewer (FireBrowse)RUBCN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)9711
GTEX Portal (Tissue expression)RUBCN
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RUBCN
DMDM Disease mutations9711
Blocks (Seattle)RUBCN
Human Protein AtlasENSG00000145016
IPIIPI00853404   IPI00924876   IPI00060439   IPI00022496   IPI00925566   IPI00925817   
Protein Interaction databases
FunCoupENSG00000145016
BioGRIDRUBCN
STRING (EMBL)RUBCN
ZODIACRUBCN
Ontologies - Pathways
Huge Navigator RUBCN [HugePedia]
snp3D : Map Gene to Disease9711
BioCentury BCIQRUBCN
ClinGenRUBCN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9711
Chemical/Pharm GKB GenePA134887849
Clinical trialRUBCN
Miscellaneous
canSAR (ICR)RUBCN (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRUBCN
EVEXRUBCN
GoPubMedRUBCN
iHOPRUBCN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:08 CET 2017

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