Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RUBCNL (RUN and cysteine rich domain containing beclin 1 interacting protein like)

Identity

Alias_namesC13orf18
KIAA0226L
chromosome 13 open reading frame 18
KIAA0226 like
Alias_symbol (synonym)FLJ21562
Other alias
HGNC (Hugo) RUBCNL
LocusID (NCBI) 80183
Atlas_Id 55866
Location 13q14.13  [Link to chromosome band 13q14]
Location_base_pair Starts at 46341739 and ends at 46390042 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RUBCNL   20420
Cards
Entrez_Gene (NCBI)RUBCNL  80183  RUN and cysteine rich domain containing beclin 1 interacting protein like
AliasesC13orf18; KIAA0226L
GeneCards (Weizmann)RUBCNL
Ensembl hg19 (Hinxton)ENSG00000102445 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102445 [Gene_View]  chr13:46341739-46390042 [Contig_View]  RUBCNL [Vega]
ICGC DataPortalENSG00000102445
TCGA cBioPortalRUBCNL
AceView (NCBI)RUBCNL
Genatlas (Paris)RUBCNL
WikiGenes80183
SOURCE (Princeton)RUBCNL
Genetics Home Reference (NIH)RUBCNL
Genomic and cartography
GoldenPath hg38 (UCSC)RUBCNL  -     chr13:46341739-46390042 -  13q14.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RUBCNL  -     13q14.13   [Description]    (hg19-Feb_2009)
EnsemblRUBCNL - 13q14.13 [CytoView hg19]  RUBCNL - 13q14.13 [CytoView hg38]
Mapping of homologs : NCBIRUBCNL [Mapview hg19]  RUBCNL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025215 AK093073 AK125750 AK125950 AK293034
RefSeq transcript (Entrez)NM_001286761 NM_001286762 NM_001286763 NM_001286764 NM_001286765 NM_001286766 NM_001349772 NM_025113
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RUBCNL
Cluster EST : UnigeneHs.98117 [ NCBI ]
CGAP (NCI)Hs.98117
Alternative Splicing GalleryENSG00000102445
Gene ExpressionRUBCNL [ NCBI-GEO ]   RUBCNL [ EBI - ARRAY_EXPRESS ]   RUBCNL [ SEEK ]   RUBCNL [ MEM ]
Gene Expression Viewer (FireBrowse)RUBCNL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80183
GTEX Portal (Tissue expression)RUBCNL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H714   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H714  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H714
Splice isoforms : SwissVarQ9H714
PhosPhoSitePlusQ9H714
Domains : Interpro (EBI)Zf-RING_9   
Domain families : Pfam (Sanger)zf-RING_9 (PF13901)   
Domain families : Pfam (NCBI)pfam13901   
Domain families : Smart (EMBL)DUF4206 (SM01175)  
Conserved Domain (NCBI)RUBCNL
DMDM Disease mutations80183
Blocks (Seattle)RUBCNL
SuperfamilyQ9H714
Human Protein AtlasENSG00000102445
Peptide AtlasQ9H714
HPRD12615
IPIIPI00640058   IPI00448906   IPI00796975   IPI00879266   IPI00878675   IPI00418999   IPI00879462   IPI00902766   IPI00917736   
Protein Interaction databases
DIP (DOE-UCLA)Q9H714
IntAct (EBI)Q9H714
FunCoupENSG00000102445
BioGRIDRUBCNL
STRING (EMBL)RUBCNL
ZODIACRUBCNL
Ontologies - Pathways
QuickGOQ9H714
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRUBCNL
Atlas of Cancer Signalling NetworkRUBCNL
Wikipedia pathwaysRUBCNL
Orthology - Evolution
OrthoDB80183
GeneTree (enSembl)ENSG00000102445
Phylogenetic Trees/Animal Genes : TreeFamRUBCNL
HOVERGENQ9H714
HOGENOMQ9H714
Homologs : HomoloGeneRUBCNL
Homology/Alignments : Family Browser (UCSC)RUBCNL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRUBCNL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RUBCNL
dbVarRUBCNL
ClinVarRUBCNL
1000_GenomesRUBCNL 
Exome Variant ServerRUBCNL
ExAC (Exome Aggregation Consortium)RUBCNL (select the gene name)
Genetic variants : HAPMAP80183
Genomic Variants (DGV)RUBCNL [DGVbeta]
DECIPHERRUBCNL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRUBCNL 
Mutations
ICGC Data PortalRUBCNL 
TCGA Data PortalRUBCNL 
Broad Tumor PortalRUBCNL
OASIS PortalRUBCNL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRUBCNL
BioMutasearch RUBCNL
DgiDB (Drug Gene Interaction Database)RUBCNL
DoCM (Curated mutations)RUBCNL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RUBCNL (select a term)
intoGenRUBCNL
Cancer3DRUBCNL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRUBCNL
Genetic Testing Registry RUBCNL
NextProtQ9H714 [Medical]
TSGene80183
GENETestsRUBCNL
Target ValidationRUBCNL
Huge Navigator RUBCNL [HugePedia]
snp3D : Map Gene to Disease80183
BioCentury BCIQRUBCNL
ClinGenRUBCNL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80183
Chemical/Pharm GKB GenePA134942431
Clinical trialRUBCNL
Miscellaneous
canSAR (ICR)RUBCNL (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRUBCNL
EVEXRUBCNL
GoPubMedRUBCNL
iHOPRUBCNL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:29:44 CEST 2017

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