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RUFY2 (RUN and FYVE domain containing 2)

Identity

Alias_symbol (synonym)RABIP4R
FLJ10063
KIAA1537
ZFYVE13
Other alias
HGNC (Hugo) RUFY2
LocusID (NCBI) 55680
Atlas_Id 72933
Location 10q21.3  [Link to chromosome band 10q21]
Location_base_pair Starts at 70136950 and ends at 70167051 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EZH2 (7q36.1) / RUFY2 (10q21.3)HERC4 (10q21.3) / RUFY2 (10q21.3)RUFY2 (10q21.3) / HNRNPH3 (10q21.3)
RUFY2 (10q21.3) / LOC100506713 ()RUFY2 (10q21.3) / RUFY2 (10q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RUFY2   19761
Cards
Entrez_Gene (NCBI)RUFY2  55680  RUN and FYVE domain containing 2
AliasesRABIP4R; ZFYVE13
GeneCards (Weizmann)RUFY2
Ensembl hg19 (Hinxton)ENSG00000204130 [Gene_View]  chr10:70136950-70167051 [Contig_View]  RUFY2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204130 [Gene_View]  chr10:70136950-70167051 [Contig_View]  RUFY2 [Vega]
ICGC DataPortalENSG00000204130
TCGA cBioPortalRUFY2
AceView (NCBI)RUFY2
Genatlas (Paris)RUFY2
WikiGenes55680
SOURCE (Princeton)RUFY2
Genetics Home Reference (NIH)RUFY2
Genomic and cartography
GoldenPath hg19 (UCSC)RUFY2  -     chr10:70136950-70167051 -  10q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RUFY2  -     10q21.3   [Description]    (hg38-Dec_2013)
EnsemblRUFY2 - 10q21.3 [CytoView hg19]  RUFY2 - 10q21.3 [CytoView hg38]
Mapping of homologs : NCBIRUFY2 [Mapview hg19]  RUFY2 [Mapview hg38]
OMIM610328   
Gene and transcription
Genbank (Entrez)AB040970 AF411980 AF461266 AK055646 AK091629
RefSeq transcript (Entrez)NM_001042417 NM_001278225 NM_017987
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)RUFY2
Cluster EST : UnigeneHs.653144 [ NCBI ]
CGAP (NCI)Hs.653144
Alternative Splicing GalleryENSG00000204130
Gene ExpressionRUFY2 [ NCBI-GEO ]   RUFY2 [ EBI - ARRAY_EXPRESS ]   RUFY2 [ SEEK ]   RUFY2 [ MEM ]
Gene Expression Viewer (FireBrowse)RUFY2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55680
GTEX Portal (Tissue expression)RUFY2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXA3
Splice isoforms : SwissVarQ8WXA3
PhosPhoSitePlusQ8WXA3
Domaine pattern : Prosite (Expaxy)RUN (PS50826)    ZF_FYVE (PS50178)   
Domains : Interpro (EBI)Run    Znf_FYVE    Znf_FYVE-rel    Znf_FYVE_PHD    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)FYVE (PF01363)    RUN (PF02759)   
Domain families : Pfam (NCBI)pfam01363    pfam02759   
Domain families : Smart (EMBL)FYVE (SM00064)  RUN (SM00593)  
Conserved Domain (NCBI)RUFY2
DMDM Disease mutations55680
Blocks (Seattle)RUFY2
SuperfamilyQ8WXA3
Human Protein AtlasENSG00000204130
Peptide AtlasQ8WXA3
HPRD11526
IPIIPI00760675   IPI00465048   IPI00973533   IPI00217122   IPI00908847   IPI00414129   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXA3
IntAct (EBI)Q8WXA3
FunCoupENSG00000204130
BioGRIDRUFY2
STRING (EMBL)RUFY2
ZODIACRUFY2
Ontologies - Pathways
QuickGOQ8WXA3
Ontology : AmiGOnucleus  metal ion binding  
Ontology : EGO-EBInucleus  metal ion binding  
NDEx NetworkRUFY2
Atlas of Cancer Signalling NetworkRUFY2
Wikipedia pathwaysRUFY2
Orthology - Evolution
OrthoDB55680
GeneTree (enSembl)ENSG00000204130
Phylogenetic Trees/Animal Genes : TreeFamRUFY2
HOVERGENQ8WXA3
HOGENOMQ8WXA3
Homologs : HomoloGeneRUFY2
Homology/Alignments : Family Browser (UCSC)RUFY2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRUFY2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RUFY2
dbVarRUFY2
ClinVarRUFY2
1000_GenomesRUFY2 
Exome Variant ServerRUFY2
ExAC (Exome Aggregation Consortium)RUFY2 (select the gene name)
Genetic variants : HAPMAP55680
Genomic Variants (DGV)RUFY2 [DGVbeta]
DECIPHER (Syndromes)10:70136950-70167051  ENSG00000204130
CONAN: Copy Number AnalysisRUFY2 
Mutations
ICGC Data PortalRUFY2 
TCGA Data PortalRUFY2 
Broad Tumor PortalRUFY2
OASIS PortalRUFY2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRUFY2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRUFY2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RUFY2
DgiDB (Drug Gene Interaction Database)RUFY2
DoCM (Curated mutations)RUFY2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RUFY2 (select a term)
intoGenRUFY2
Cancer3DRUFY2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610328   
Orphanet
MedgenRUFY2
Genetic Testing Registry RUFY2
NextProtQ8WXA3 [Medical]
TSGene55680
GENETestsRUFY2
Huge Navigator RUFY2 [HugePedia]
snp3D : Map Gene to Disease55680
BioCentury BCIQRUFY2
ClinGenRUFY2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55680
Chemical/Pharm GKB GenePA134935922
Clinical trialRUFY2
Miscellaneous
canSAR (ICR)RUFY2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRUFY2
EVEXRUFY2
GoPubMedRUFY2
iHOPRUFY2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:09 CET 2017

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