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RUFY4 (RUN and FYVE domain containing 4)

Identity

Alias_symbol (synonym)FLJ46536
ZFYVE31
Other alias
HGNC (Hugo) RUFY4
LocusID (NCBI) 285180
Atlas_Id 72935
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 218069015 and ends at 218090581 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)RUFY4   24804
Cards
Entrez_Gene (NCBI)RUFY4  285180  RUN and FYVE domain containing 4
AliasesZFYVE31
GeneCards (Weizmann)RUFY4
Ensembl hg19 (Hinxton)ENSG00000188282 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188282 [Gene_View]  chr2:218069015-218090581 [Contig_View]  RUFY4 [Vega]
ICGC DataPortalENSG00000188282
TCGA cBioPortalRUFY4
AceView (NCBI)RUFY4
Genatlas (Paris)RUFY4
WikiGenes285180
SOURCE (Princeton)RUFY4
Genetics Home Reference (NIH)RUFY4
Genomic and cartography
GoldenPath hg38 (UCSC)RUFY4  -     chr2:218069015-218090581 +  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RUFY4  -     2q35   [Description]    (hg19-Feb_2009)
EnsemblRUFY4 - 2q35 [CytoView hg19]  RUFY4 - 2q35 [CytoView hg38]
Mapping of homologs : NCBIRUFY4 [Mapview hg19]  RUFY4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128393 AK131246 AW452848 BC113712 BX641664
RefSeq transcript (Entrez)NM_198483
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RUFY4
Cluster EST : UnigeneHs.570069 [ NCBI ]
CGAP (NCI)Hs.570069
Alternative Splicing GalleryENSG00000188282
Gene ExpressionRUFY4 [ NCBI-GEO ]   RUFY4 [ EBI - ARRAY_EXPRESS ]   RUFY4 [ SEEK ]   RUFY4 [ MEM ]
Gene Expression Viewer (FireBrowse)RUFY4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285180
GTEX Portal (Tissue expression)RUFY4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZNE9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZNE9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZNE9
Splice isoforms : SwissVarQ6ZNE9
PhosPhoSitePlusQ6ZNE9
Domaine pattern : Prosite (Expaxy)RUN (PS50826)    ZF_FYVE (PS50178)   
Domains : Interpro (EBI)Run_dom    Znf_FYVE-rel    Znf_FYVE_PHD    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)RUN (PF02759)   
Domain families : Pfam (NCBI)pfam02759   
Domain families : Smart (EMBL)RUN (SM00593)  
Conserved Domain (NCBI)RUFY4
DMDM Disease mutations285180
Blocks (Seattle)RUFY4
SuperfamilyQ6ZNE9
Human Protein AtlasENSG00000188282
Peptide AtlasQ6ZNE9
HPRD13539
IPIIPI00394825   IPI00914999   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZNE9
IntAct (EBI)Q6ZNE9
FunCoupENSG00000188282
BioGRIDRUFY4
STRING (EMBL)RUFY4
ZODIACRUFY4
Ontologies - Pathways
QuickGOQ6ZNE9
Ontology : AmiGOprotein binding  metal ion binding  
Ontology : EGO-EBIprotein binding  metal ion binding  
NDEx NetworkRUFY4
Atlas of Cancer Signalling NetworkRUFY4
Wikipedia pathwaysRUFY4
Orthology - Evolution
OrthoDB285180
GeneTree (enSembl)ENSG00000188282
Phylogenetic Trees/Animal Genes : TreeFamRUFY4
HOVERGENQ6ZNE9
HOGENOMQ6ZNE9
Homologs : HomoloGeneRUFY4
Homology/Alignments : Family Browser (UCSC)RUFY4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRUFY4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RUFY4
dbVarRUFY4
ClinVarRUFY4
1000_GenomesRUFY4 
Exome Variant ServerRUFY4
ExAC (Exome Aggregation Consortium)RUFY4 (select the gene name)
Genetic variants : HAPMAP285180
Genomic Variants (DGV)RUFY4 [DGVbeta]
DECIPHERRUFY4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRUFY4 
Mutations
ICGC Data PortalRUFY4 
TCGA Data PortalRUFY4 
Broad Tumor PortalRUFY4
OASIS PortalRUFY4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRUFY4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRUFY4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RUFY4
DgiDB (Drug Gene Interaction Database)RUFY4
DoCM (Curated mutations)RUFY4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RUFY4 (select a term)
intoGenRUFY4
Cancer3DRUFY4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRUFY4
Genetic Testing Registry RUFY4
NextProtQ6ZNE9 [Medical]
TSGene285180
GENETestsRUFY4
Target ValidationRUFY4
Huge Navigator RUFY4 [HugePedia]
snp3D : Map Gene to Disease285180
BioCentury BCIQRUFY4
ClinGenRUFY4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285180
Chemical/Pharm GKB GenePA147357421
Clinical trialRUFY4
Miscellaneous
canSAR (ICR)RUFY4 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRUFY4
EVEXRUFY4
GoPubMedRUFY4
iHOPRUFY4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:37:04 CEST 2017

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