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RUNDC1 (RUN domain containing 1)

Identity

Alias_symbol (synonym)DKFZp761H0421
Other alias-
HGNC (Hugo) RUNDC1
LocusID (NCBI) 146923
Atlas_Id 56474
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 41132579 and ends at 41145709 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KDM1B (6p22.3) / RUNDC1 (17q21.31)RUNDC1 (17q21.31) / NDUFB9 (8q24.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RUNDC1   25418
Cards
Entrez_Gene (NCBI)RUNDC1  146923  RUN domain containing 1
Aliases
GeneCards (Weizmann)RUNDC1
Ensembl hg19 (Hinxton)ENSG00000198863 [Gene_View]  chr17:41132579-41145709 [Contig_View]  RUNDC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198863 [Gene_View]  chr17:41132579-41145709 [Contig_View]  RUNDC1 [Vega]
ICGC DataPortalENSG00000198863
TCGA cBioPortalRUNDC1
AceView (NCBI)RUNDC1
Genatlas (Paris)RUNDC1
WikiGenes146923
SOURCE (Princeton)RUNDC1
Genetics Home Reference (NIH)RUNDC1
Genomic and cartography
GoldenPath hg19 (UCSC)RUNDC1  -     chr17:41132579-41145709 +  17q21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RUNDC1  -     17q21.31   [Description]    (hg38-Dec_2013)
EnsemblRUNDC1 - 17q21.31 [CytoView hg19]  RUNDC1 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIRUNDC1 [Mapview hg19]  RUNDC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001321381 NM_173079
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RUNDC1
Cluster EST : UnigeneHs.632255 [ NCBI ]
CGAP (NCI)Hs.632255
Alternative Splicing GalleryENSG00000198863
Gene ExpressionRUNDC1 [ NCBI-GEO ]   RUNDC1 [ EBI - ARRAY_EXPRESS ]   RUNDC1 [ SEEK ]   RUNDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)RUNDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146923
GTEX Portal (Tissue expression)RUNDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96C34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96C34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96C34
Splice isoforms : SwissVarQ96C34
PhosPhoSitePlusQ96C34
Domaine pattern : Prosite (Expaxy)RUN (PS50826)   
Domains : Interpro (EBI)Run_dom   
Domain families : Pfam (Sanger)RUN (PF02759)   
Domain families : Pfam (NCBI)pfam02759   
Domain families : Smart (EMBL)RUN (SM00593)  
Conserved Domain (NCBI)RUNDC1
DMDM Disease mutations146923
Blocks (Seattle)RUNDC1
SuperfamilyQ96C34
Human Protein AtlasENSG00000198863
Peptide AtlasQ96C34
HPRD15283
IPIIPI00410625   IPI00844354   
Protein Interaction databases
DIP (DOE-UCLA)Q96C34
IntAct (EBI)Q96C34
FunCoupENSG00000198863
BioGRIDRUNDC1
STRING (EMBL)RUNDC1
ZODIACRUNDC1
Ontologies - Pathways
QuickGOQ96C34
Ontology : AmiGOGTPase activator activity  intracellular  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  intracellular  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
NDEx NetworkRUNDC1
Atlas of Cancer Signalling NetworkRUNDC1
Wikipedia pathwaysRUNDC1
Orthology - Evolution
OrthoDB146923
GeneTree (enSembl)ENSG00000198863
Phylogenetic Trees/Animal Genes : TreeFamRUNDC1
HOVERGENQ96C34
HOGENOMQ96C34
Homologs : HomoloGeneRUNDC1
Homology/Alignments : Family Browser (UCSC)RUNDC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRUNDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RUNDC1
dbVarRUNDC1
ClinVarRUNDC1
1000_GenomesRUNDC1 
Exome Variant ServerRUNDC1
ExAC (Exome Aggregation Consortium)RUNDC1 (select the gene name)
Genetic variants : HAPMAP146923
Genomic Variants (DGV)RUNDC1 [DGVbeta]
DECIPHER (Syndromes)17:41132579-41145709  ENSG00000198863
CONAN: Copy Number AnalysisRUNDC1 
Mutations
ICGC Data PortalRUNDC1 
TCGA Data PortalRUNDC1 
Broad Tumor PortalRUNDC1
OASIS PortalRUNDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRUNDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRUNDC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RUNDC1
DgiDB (Drug Gene Interaction Database)RUNDC1
DoCM (Curated mutations)RUNDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RUNDC1 (select a term)
intoGenRUNDC1
Cancer3DRUNDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRUNDC1
Genetic Testing Registry RUNDC1
NextProtQ96C34 [Medical]
TSGene146923
GENETestsRUNDC1
Huge Navigator RUNDC1 [HugePedia]
snp3D : Map Gene to Disease146923
BioCentury BCIQRUNDC1
ClinGenRUNDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146923
Chemical/Pharm GKB GenePA134956633
Clinical trialRUNDC1
Miscellaneous
canSAR (ICR)RUNDC1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRUNDC1
EVEXRUNDC1
GoPubMedRUNDC1
iHOPRUNDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:25:57 CET 2017

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